Familial X-linked hypophosphatemic vitamin D refractory rickets
An X-linked dominant mode(s) within the Bone disorders category
Conflicting classifications of pathogenicity
2
Likely pathogenic
2
Pathogenic
10
Pathogenic/Likely pathogenic
2
| Variant name | Variant type | GRCH38 location | Germline classification | Molecular consequence | dbSNP_ID | Submitter |
|---|---|---|---|---|---|---|
| NM_000444.6(PHEX):c.2028_2032del (p.Thr677fs) | Deletion | ChrX:22227566 - 22227570 | Likely pathogenic | Non-coding transcript variant|frameshift variant | rs1057518246 |
.Lifecell International Pvt. Ltd |
| NM_000444.6(PHEX):c.1376C>A (p.Ala459Glu) | Single nucleotide variant | ChrX:22133596 | Pathogenic | Missense variant | rs2147086514 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India |
| NM_000444.6(PHEX):c.350-1G>A | Single nucleotide variant | ChrX:22076387 | Pathogenic | Splice acceptor variant | rs2147019098 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India |
| NM_000444.6(PHEX):c.2188G>T (p.Ala730Ser) | Single nucleotide variant | ChrX:22247891 | Conflicting classifications of pathogenicity | Missense variant|3 prime UTR variant | rs752729907 |
.Laboratory of Cyto-molecular Genetics, Department of Anatomy, All India Institute of Medical Sciences (AIIMS), New Delhi |
| NM_000444.6(PHEX):c.1970A>G (p.Tyr657Cys) | Single nucleotide variant | ChrX:22227511 | Pathogenic/Likely pathogenic | Non-coding transcript variant|missense variant | rs2147184570 |
.Laboratory of Cyto-molecular Genetics, Department of Anatomy, All India Institute of Medical Sciences (AIIMS), New Delhi |
| NM_000444.6(PHEX):c.2071-1G>C | Single nucleotide variant | ChrX:22245332 | Pathogenic | Splice acceptor variant|intron variant | rs886041374 |
.Laboratory of Cyto-molecular Genetics, Department of Anatomy, All India Institute of Medical Sciences (AIIMS), New Delhi |
| NM_000444.6(PHEX):c.1482+5G>C | Single nucleotide variant | ChrX:22168394 | Pathogenic | Intron variant | rs1269067103 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India |
| NM_000444.6(PHEX):c.58C>T (p.Arg20Ter) | Single nucleotide variant | ChrX:22033063 | Pathogenic | Nonsense | rs770573978 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India |
| NM_000444.6(PHEX):c.2159C>A (p.Ala720Glu) | Single nucleotide variant | ChrX:22247862 | Likely pathogenic | Missense variant|nonsense | rs1057517798 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India |
| NM_000444.6(PHEX):c.871C>T (p.Arg291Ter) | Single nucleotide variant | ChrX:22096976 | Pathogenic | Nonsense | rs866429868 |
.Laboratory of Cyto-molecular Genetics, Department of Anatomy, All India Institute of Medical Sciences (AIIMS), New Delhi |
| NM_000444.6(PHEX):c.118+7G>T | Single nucleotide variant | ChrX:22033130 | Conflicting classifications of pathogenicity | Intron variant | rs534550003 |
.Laboratory of Cyto-molecular Genetics, Department of Anatomy, All India Institute of Medical Sciences (AIIMS), New Delhi |
| NM_000444.6(PHEX):c.1979G>A (p.Trp660Ter) | Single nucleotide variant | ChrX:22227520 | Pathogenic | Non-coding transcript variant|nonsense | rs886041369 |
.Laboratory of Cyto-molecular Genetics, Department of Anatomy, All India Institute of Medical Sciences (AIIMS), New Delhi |
| NM_000444.6(PHEX):c.1601C>T (p.Pro534Leu) | Single nucleotide variant | ChrX:22190458 | Pathogenic | Missense variant | rs886041363 |
.Laboratory of Cyto-molecular Genetics, Department of Anatomy, All India Institute of Medical Sciences (AIIMS), New Delhi |
| NM_000444.6(PHEX):c.1586_1586+1del | Microsatellite | ChrX:22178374 - 22178375 | Pathogenic | Splice donor variant | rs886041362 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India |
| NM_000444.6(PHEX):c.2239C>T (p.Arg747Ter) | Single nucleotide variant | ChrX:22247942 | Pathogenic/Likely pathogenic | Nonsense|3 prime UTR variant | rs886041227 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India |
| NM_000444.6(PHEX):c.1700+2T>C | Single nucleotide variant | ChrX:22212960 | Pathogenic | Splice donor variant | rs1556128253 |
.Laboratory of Cyto-molecular Genetics, Department of Anatomy, All India Institute of Medical Sciences (AIIMS), New Delhi |
Indian Institutes & Variant Submission Overview
Chromosome-wise Variant Distribution