GenTIGSA Gene Database on Rare Genetic Disorders

Variants in ClinVar from 539 of 916 Rare Genetic Disorders of GenTIGS

Familial X-linked hypophosphatemic vitamin D refractory rickets

An  X-linked dominant  mode(s) within the Bone disorders  category

Conflicting classifications of pathogenicity 2
Likely pathogenic 2
Pathogenic 10
Pathogenic/Likely pathogenic 2

Variant name Variant type GRCH38 location Germline classification Molecular consequence dbSNP_ID Submitter
NM_000444.6(PHEX):c.2028_2032del (p.Thr677fs) Deletion ChrX:22227566 - 22227570 Likely pathogenic Non-coding transcript variant|frameshift variant rs1057518246 .Lifecell International Pvt. Ltd
NM_000444.6(PHEX):c.1376C>A (p.Ala459Glu) Single nucleotide variant ChrX:22133596 Pathogenic Missense variant rs2147086514 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_000444.6(PHEX):c.350-1G>A Single nucleotide variant ChrX:22076387 Pathogenic Splice acceptor variant rs2147019098 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_000444.6(PHEX):c.2188G>T (p.Ala730Ser) Single nucleotide variant ChrX:22247891 Conflicting classifications of pathogenicity Missense variant|3 prime UTR variant rs752729907 .Laboratory of Cyto-molecular Genetics, Department of Anatomy, All India Institute of Medical Sciences (AIIMS), New Delhi
NM_000444.6(PHEX):c.1970A>G (p.Tyr657Cys) Single nucleotide variant ChrX:22227511 Pathogenic/Likely pathogenic Non-coding transcript variant|missense variant rs2147184570 .Laboratory of Cyto-molecular Genetics, Department of Anatomy, All India Institute of Medical Sciences (AIIMS), New Delhi
NM_000444.6(PHEX):c.2071-1G>C Single nucleotide variant ChrX:22245332 Pathogenic Splice acceptor variant|intron variant rs886041374 .Laboratory of Cyto-molecular Genetics, Department of Anatomy, All India Institute of Medical Sciences (AIIMS), New Delhi
NM_000444.6(PHEX):c.1482+5G>C Single nucleotide variant ChrX:22168394 Pathogenic Intron variant rs1269067103 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_000444.6(PHEX):c.58C>T (p.Arg20Ter) Single nucleotide variant ChrX:22033063 Pathogenic Nonsense rs770573978 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_000444.6(PHEX):c.2159C>A (p.Ala720Glu) Single nucleotide variant ChrX:22247862 Likely pathogenic Missense variant|nonsense rs1057517798 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_000444.6(PHEX):c.871C>T (p.Arg291Ter) Single nucleotide variant ChrX:22096976 Pathogenic Nonsense rs866429868 .Laboratory of Cyto-molecular Genetics, Department of Anatomy, All India Institute of Medical Sciences (AIIMS), New Delhi
NM_000444.6(PHEX):c.118+7G>T Single nucleotide variant ChrX:22033130 Conflicting classifications of pathogenicity Intron variant rs534550003 .Laboratory of Cyto-molecular Genetics, Department of Anatomy, All India Institute of Medical Sciences (AIIMS), New Delhi
NM_000444.6(PHEX):c.1979G>A (p.Trp660Ter) Single nucleotide variant ChrX:22227520 Pathogenic Non-coding transcript variant|nonsense rs886041369 .Laboratory of Cyto-molecular Genetics, Department of Anatomy, All India Institute of Medical Sciences (AIIMS), New Delhi
NM_000444.6(PHEX):c.1601C>T (p.Pro534Leu) Single nucleotide variant ChrX:22190458 Pathogenic Missense variant rs886041363 .Laboratory of Cyto-molecular Genetics, Department of Anatomy, All India Institute of Medical Sciences (AIIMS), New Delhi
NM_000444.6(PHEX):c.1586_1586+1del Microsatellite ChrX:22178374 - 22178375 Pathogenic Splice donor variant rs886041362 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_000444.6(PHEX):c.2239C>T (p.Arg747Ter) Single nucleotide variant ChrX:22247942 Pathogenic/Likely pathogenic Nonsense|3 prime UTR variant rs886041227 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_000444.6(PHEX):c.1700+2T>C Single nucleotide variant ChrX:22212960 Pathogenic Splice donor variant rs1556128253 .Laboratory of Cyto-molecular Genetics, Department of Anatomy, All India Institute of Medical Sciences (AIIMS), New Delhi

Indian Institutes & Variant Submission Overview
Chromosome-wise Variant Distribution