GenTIGSA Gene Database on Rare Genetic Disorders
  Beta Version

Variants from 536 rare genetic disorders, with a total of 897 reported, submitted from India

xeroderma pigmentosum

An  Autosomal recessive  mode(s) within the Skin disorders  category

Likely pathogenic 2
Pathogenic 2
Pathogenic/Likely pathogenic 3

Variant name Variant type GRCH38 location Germline classification Molecular consequence dbSNP_ID Submitter
NM_000380.4(XPA):c.335_338delinsAAAGAATAC (p.Phe112_Met113delinsTer) Indel Chr9:97689585 - 97689588 Likely pathogenic Nonsense|non-coding transcript variant .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_000380.4(XPA):c.331G>T (p.Glu111Ter) Single nucleotide variant Chr9:97689592 Pathogenic Nonsense|non-coding transcript variant rs769255883 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_000380.4(XPA):c.428_429del (p.Glu143fs) Microsatellite Chr9:97687222 - 97687223 Pathogenic/Likely pathogenic Frameshift variant|non-coding transcript variant rs1554701540 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_000380.4(XPA):c.648_649del (p.Lys217fs) Deletion Chr9:97684947 - 97684948 Pathogenic/Likely pathogenic Frameshift variant|non-coding transcript variant rs1057519018 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics
.Neuberg Centre For Genomic Medicine, NCGM
NM_004628.5(XPC):c.398G>A (p.Trp133Ter) Single nucleotide variant Chr3:14170452 Pathogenic 5 prime UTR variant|nonsense|non-coding transcript variant .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_004628.5(XPC):c.2420+2T>C Single nucleotide variant Chr3:14148560 Pathogenic/Likely pathogenic Splice donor variant rs778987248 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_004628.5(XPC):c.2034-1G>A Single nucleotide variant Chr3:14152417 Likely pathogenic Splice acceptor variant rs869025275 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics

Graph displaying all Indian institutes, the rare genetic disorders they studied, and the variants submitted to ClinVar