GenTIGSA Gene Database on Rare Genetic Disorders

Variants in ClinVar from 539 of 916 Rare Genetic Disorders of GenTIGS

Spondyloepiphyseal dysplasia with congenital joint dislocations

An  Autosomal recessive  mode(s) within the Bone disorders  category

Conflicting classifications of pathogenicity 2
Likely pathogenic 5
Pathogenic 2
Pathogenic/Likely pathogenic 1

Variant name Variant type GRCH38 location Germline classification Molecular consequence dbSNP_ID Submitter
NM_004273.5(CHST3):c.857T>A (p.Leu286Gln) Single nucleotide variant Chr10:72007888 Likely pathogenic Missense variant rs121908620 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_004273.5(CHST3):c.431G>A (p.Gly144Asp) Single nucleotide variant Chr10:72007462 Likely pathogenic Missense variant rs865931042 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_004273.5(CHST3):c.768C>G (p.Asn256Lys) Single nucleotide variant Chr10:72007799 Likely pathogenic Missense variant rs1416637363 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_004273.5(CHST3):c.500A>G (p.His167Arg) Single nucleotide variant Chr10:72007531 Likely pathogenic Missense variant rs2131774841 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_004273.5(CHST3):c.430G>A (p.Gly144Ser) Single nucleotide variant Chr10:72007461 Conflicting classifications of pathogenicity Missense variant rs1360950889 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_004273.5(CHST3):c.1165G>C (p.Ala389Pro) Single nucleotide variant Chr10:72008196 Likely pathogenic Missense variant rs1003539672 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_004273.5(CHST3):c.688G>A (p.Glu230Lys) Single nucleotide variant Chr10:72007719 Conflicting classifications of pathogenicity Missense variant rs774599785 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_004273.5(CHST3):c.491C>T (p.Pro164Leu) Single nucleotide variant Chr10:72007522 Pathogenic Missense variant rs771866012 .Department of Medical Genetics, Sanjay Gandhi Post Graduate Institute of Medical Sciences
NM_004273.5(CHST3):c.904G>C (p.Asp302His) Single nucleotide variant Chr10:72007935 Pathogenic Missense variant rs1316347883 .Department of Medical Genetics, Sanjay Gandhi Post Graduate Institute of Medical Sciences
NM_004273.5(CHST3):c.533dup (p.Ala179fs) Duplication Chr10:72007558 - 72007559 Pathogenic/Likely pathogenic Frameshift variant rs769540174 .Department of Medical Genetics, Sanjay Gandhi Post Graduate Institute of Medical Sciences

Indian Institutes & Variant Submission Overview
Chromosome-wise Variant Distribution