GenTIGSA Gene Database on Rare Genetic Disorders

Variants in ClinVar from 539 of 916 Rare Genetic Disorders of GenTIGS

Short-rib thoracic dysplasia 6 with or without polydactyly

An  Autosomal recessive, Digenic recessive  mode(s) within the Bone disorders  category

Likely pathogenic 1
Pathogenic 4

Variant name Variant type GRCH38 location Germline classification Molecular consequence dbSNP_ID Submitter
NM_001199397.3(NEK1):c.1238dup (p.Ser414fs) Duplication Chr4:169561507 - 169561508 Pathogenic Frameshift variant|non-coding transcript variant|intron variant .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_001199397.3(NEK1):c.213del (p.Glu72fs) Deletion Chr4:169602009 Pathogenic Frameshift variant|non-coding transcript variant rs2150139071 .Institute of Medical Genetics and Genomics, Sir Ganga Ram Hospital
NM_001199397.3(NEK1):c.3391G>C (p.Asp1131His) Single nucleotide variant Chr4:169401844 Likely pathogenic Missense variant|non-coding transcript variant rs2111032650 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_001199397.3(NEK1):c.1957C>T (p.Arg653Ter) Single nucleotide variant Chr4:169507087 Pathogenic Nonsense|non-coding transcript variant|intron variant rs773156346 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_001199397.3(NEK1):c.3337G>T (p.Glu1113Ter) Single nucleotide variant Chr4:169406633 Pathogenic Nonsense|non-coding transcript variant rs1732670701 .Diagnostics Division, CENTRE FOR DNA FINGERPRINTING AND DIAGNOSTICS

Indian Institutes & Variant Submission Overview
Chromosome-wise Variant Distribution