GenTIGSA Gene Database on Rare Genetic Disorders

Variants in ClinVar from 539 of 916 Rare Genetic Disorders of GenTIGS

Schwartz-Jampel syndrome

An  Autosomal recessive  mode(s) within the Bone disorders  category

Likely pathogenic 3
Uncertain significance 1

Variant name Variant type GRCH38 location Germline classification Molecular consequence dbSNP_ID Submitter
NM_005529.7(HSPG2):c.4220A>G (p.Lys1407Arg) Single nucleotide variant Chr1:21872187 Uncertain significance Missense variant rs2550748902 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_005529.7(HSPG2):c.5296G>A (p.Ala1766Thr) Single nucleotide variant Chr1:21857383 Likely pathogenic Missense variant rs1239294172 .Division of Medical Genetics, Department of Pediatrics, All India Institute of Medical Sciences, New Delhi
NM_005529.7(HSPG2):c.11730C>A (p.Cys3910Ter) Single nucleotide variant Chr1:21830033 Likely pathogenic Nonsense rs1215934207 .Pediatrics Genetics, Post Graduate Institute of Medical Education and Research
NM_005529.7(HSPG2):c.4740+5G>A Single nucleotide variant Chr1:21864095 Likely pathogenic Intron variant rs886039909 .Diagnostics Division, CENTRE FOR DNA FINGERPRINTING AND DIAGNOSTICS

Indian Institutes & Variant Submission Overview
Chromosome-wise Variant Distribution