GenTIGSA Gene Database on Rare Genetic Disorders

Variants in ClinVar from 539 of 916 Rare Genetic Disorders of GenTIGS

Pyknodysostosis

An  Autosomal recessive  mode(s) within the Bone disorders  category

Likely pathogenic 3
Pathogenic 4
Pathogenic/Likely pathogenic 1
Uncertain significance 3

Variant name Variant type GRCH38 location Germline classification Molecular consequence dbSNP_ID Submitter
NM_000396.4(CTSK):c.148T>G (p.Trp50Gly) Single nucleotide variant Chr1:150806197 Likely pathogenic Missense variant rs2101953595 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_000396.4(CTSK):c.120+1G>T Single nucleotide variant Chr1:150806685 Pathogenic Splice donor variant rs1057517279 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_000396.4(CTSK):c.399+1G>A Single nucleotide variant Chr1:150805860 Pathogenic Splice donor variant rs2101953129 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_000396.4(CTSK):c.827A>G (p.His276Arg) Single nucleotide variant Chr1:150799231 Likely pathogenic Missense variant rs2101947647 .Department of Medical Genetics, Sanjay Gandhi Post Graduate Institute of Medical Sciences
NM_000396.4(CTSK):c.375A>G (p.Gly125=) Single nucleotide variant Chr1:150805885 Uncertain significance Synonymous variant rs766065317 .Department of Medical Genetics, Sanjay Gandhi Post Graduate Institute of Medical Sciences
NM_000396.4(CTSK):c.243+4A>G Single nucleotide variant Chr1:150806098 Uncertain significance Intron variant rs2101953449 .Department of Medical Genetics, Sanjay Gandhi Post Graduate Institute of Medical Sciences
NM_000396.4(CTSK):c.884A>C (p.Lys295Thr) Single nucleotide variant Chr1:150799174 Uncertain significance Missense variant rs2101947591 .Department of Medical Genetics, Sanjay Gandhi Post Graduate Institute of Medical Sciences
NM_000396.4(CTSK):c.907G>A (p.Gly303Arg) Single nucleotide variant Chr1:150796882 Pathogenic Missense variant rs2101946013 .Department of Medical Genetics, Sanjay Gandhi Post Graduate Institute of Medical Sciences
NM_000396.4(CTSK):c.556T>C (p.Phe186Leu) Single nucleotide variant Chr1:150804083 Likely pathogenic Missense variant rs2101951483 .Department of Medical Genetics, Sanjay Gandhi Post Graduate Institute of Medical Sciences
NM_000396.4(CTSK):c.158dup (p.Asn53fs) Duplication Chr1:150806186 - 150806187 Pathogenic Frameshift variant rs764168526 .Department of Medical Genetics, Sanjay Gandhi Post Graduate Institute of Medical Sciences
NM_000396.4(CTSK):c.568C>T (p.Gln190Ter) Single nucleotide variant Chr1:150804071 Pathogenic/Likely pathogenic Nonsense rs202040269 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India

Indian Institutes & Variant Submission Overview
Chromosome-wise Variant Distribution