GenTIGSA Gene Database on Rare Genetic Disorders

Variants in ClinVar from 539 of 916 Rare Genetic Disorders of GenTIGS

Cornelia de Lange syndrome 1

An  Autosomal dominant  mode(s) within the Multisystemic disorders  category

Likely pathogenic 4
Pathogenic 2
Pathogenic/Likely pathogenic 1
Uncertain significance 2

Variant name Variant type GRCH38 location Germline classification Molecular consequence dbSNP_ID Submitter
NM_133433.4(NIPBL):c.4226_4227del (p.Thr1409fs) Microsatellite Chr5:37007458 - 37007459 Pathogenic Frameshift variant rs2478158664 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_133433.4(NIPBL):c.4455G>A (p.Met1485Ile) Single nucleotide variant Chr5:37010120 Uncertain significance Missense variant rs2478190071 .Division of Medical Genetics, Department of Pediatrics, All India Institute of Medical Sciences, New Delhi
NM_133433.4(NIPBL):c.551dup (p.Gly185fs) Duplication Chr5:36962214 - 36962215 Likely pathogenic Frameshift variant rs2479033684 .Lifecell International Pvt. Ltd
NM_133433.4(NIPBL):c.328A>T (p.Lys110Ter) Single nucleotide variant Chr5:36958201 Likely pathogenic Nonsense rs2479004915 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_133433.4(NIPBL):c.4560+4A>G Single nucleotide variant Chr5:37010229 Likely pathogenic Intron variant rs2478191869 .Department of Medical Genetics, Sanjay Gandhi Post Graduate Institute of Medical Sciences
NM_133433.3(NIPBL):c.3856-?_4239+?del Deletion Chr: Uncertain significance .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics
NM_133433.4(NIPBL):c.7168G>A (p.Ala2390Thr) Single nucleotide variant Chr5:37052471 Pathogenic/Likely pathogenic Missense variant rs587784036 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics
NM_133433.4(NIPBL):c.5456G>A (p.Arg1819Gln) Single nucleotide variant Chr5:37022272 Likely pathogenic Missense variant rs80358366 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_133433.4(NIPBL):c.2479_2480del (p.Arg827fs) Deletion Chr5:36985659 - 36985660 Pathogenic Frameshift variant rs398124465 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics

Indian Institutes & Variant Submission Overview
Chromosome-wise Variant Distribution