GenTIGSA Gene Database on Rare Genetic Disorders

Variants in ClinVar from 539 of 916 Rare Genetic Disorders of GenTIGS

Autosomal recessive osteopetrosis 1

An  Autosomal recessive  mode(s) within the Bone disorders  category

Pathogenic 7
Pathogenic/Likely pathogenic 6
Uncertain significance 1

Variant name Variant type GRCH38 location Germline classification Molecular consequence dbSNP_ID Submitter
NM_006019.4(TCIRG1):c.1885C>T (p.Gln629Ter) Single nucleotide variant Chr11:68049292 Pathogenic Nonsense rs895239701 .Molecular Lab, Department of Haematology, Christian Medical College
NM_006019.4(TCIRG1):c.2236+1G>C Single nucleotide variant Chr11:68050255 Pathogenic Splice donor variant rs1475338876 .Molecular Lab, Department of Haematology, Christian Medical College
NM_006019.4(TCIRG1):c.969G>A (p.Trp323Ter) Single nucleotide variant Chr11:68044293 Pathogenic Nonsense rs2134442342 .Molecular Lab, Department of Haematology, Christian Medical College
NM_006019.4(TCIRG1):c.1153G>A (p.Glu385Lys) Single nucleotide variant Chr11:68045090 Uncertain significance Missense variant rs2134445416 .Molecular Lab, Department of Haematology, Christian Medical College
NM_006019.4(TCIRG1):c.1165+1G>C Single nucleotide variant Chr11:68045103 Pathogenic/Likely pathogenic Splice donor variant rs780745598 .Molecular Lab, Department of Haematology, Christian Medical College
NM_006019.4(TCIRG1):c.2014-1G>A Single nucleotide variant Chr11:68049961 Pathogenic Splice acceptor variant rs1197237618 .Molecular Lab, Department of Haematology, Christian Medical College
NM_006019.4(TCIRG1):c.807+2T>G Single nucleotide variant Chr11:68043909 Pathogenic Splice donor variant rs2134440422 .Molecular Lab, Department of Haematology, Christian Medical College
NM_006019.4(TCIRG1):c.688C>T (p.Gln230Ter) Single nucleotide variant Chr11:68043628 Pathogenic 5 prime UTR variant|nonsense rs1156299579 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
.Molecular Lab, Department of Haematology, Christian Medical College
NM_006019.4(TCIRG1):c.971dup (p.Cys324fs) Duplication Chr11:68044294 - 68044295 Pathogenic/Likely pathogenic Frameshift variant rs1565156743 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
.Molecular Lab, Department of Haematology, Christian Medical College
NM_006019.4(TCIRG1):c.196+1G>T Single nucleotide variant Chr11:68041832 Pathogenic/Likely pathogenic Splice donor variant rs2134432498 .Molecular Lab, Department of Haematology, Christian Medical College
.Neuberg Centre For Genomic Medicine, NCGM
NM_006019.4(TCIRG1):c.1684C>T (p.Gln562Ter) Single nucleotide variant Chr11:68049091 Pathogenic/Likely pathogenic Nonsense rs1855655612 .Molecular Lab, Department of Haematology, Christian Medical College
NM_006019.4(TCIRG1):c.553del (p.Leu185fs) Deletion Chr11:68043419 Pathogenic 5 prime UTR variant|frameshift variant rs1855280375 .Diagnostics Services (NGS), CSIR - Centre For Cellular And Molecular Biology
.Molecular Lab, Department of Haematology, Christian Medical College
NM_006019.4(TCIRG1):c.1372G>A (p.Gly458Ser) Single nucleotide variant Chr11:68047713 Pathogenic/Likely pathogenic Missense variant rs200851583 .Molecular Lab, Department of Haematology, Christian Medical College
NM_006019.4(TCIRG1):c.1213G>A (p.Gly405Arg) Single nucleotide variant Chr11:68047480 Pathogenic/Likely pathogenic Missense variant rs137853150 .Molecular Lab, Department of Haematology, Christian Medical College

Indian Institutes & Variant Submission Overview
Chromosome-wise Variant Distribution