GenTIGSA Gene Database on Rare Genetic Disorders

Variants in ClinVar from 539 of 916 Rare Genetic Disorders of GenTIGS

Waardenburg syndrome

An  Autosomal dominant  mode(s) within the Eye disorders / Ear disorders  category

Conflicting classifications of pathogenicity 1
Likely pathogenic 2
Pathogenic 5
Pathogenic/Likely pathogenic 2
Uncertain significance 3

Variant name Variant type GRCH38 location Germline classification Molecular consequence dbSNP_ID Submitter
Single allele Deletion Chr13:70363696 - 79853892 Pathogenic .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_207034.3(EDN3):c.332G>T (p.Cys111Phe) Single nucleotide variant Chr20:59301689 Uncertain significance Missense variant rs773779627 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_001122659.3(EDNRB):c.1103A>T (p.Asp368Val) Single nucleotide variant Chr13:77899950 Uncertain significance Missense variant rs2137603390 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_001122659.3(EDNRB):c.57C>A (p.Cys19Ter) Single nucleotide variant Chr13:77918517 Pathogenic/Likely pathogenic Nonsense rs768126403 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_001122659.3(EDNRB):c.403G>A (p.Gly135Ser) Single nucleotide variant Chr13:77918171 Uncertain significance Missense variant rs760677132 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_001354604.2(MITF):c.1039C>G (p.Arg347Gly) Single nucleotide variant Chr3:69959280 Conflicting classifications of pathogenicity Missense variant rs1559751245 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_001354604.2(MITF):c.1031+1G>A Single nucleotide variant Chr3:69956531 Pathogenic Splice donor variant rs1559749017 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_001354604.2(MITF):c.1084C>T (p.Arg362Ter) Single nucleotide variant Chr3:69959325 Pathogenic/Likely pathogenic Nonsense rs1057517966 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_181458.4(PAX3):c.829C>T (p.Gln277Ter) Single nucleotide variant Chr2:222221351 Pathogenic Nonsense rs2106074565 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_181458.4(PAX3):c.166C>T (p.Arg56Cys) Single nucleotide variant Chr2:222297133 Likely pathogenic Missense variant rs1279989885 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_181458.4(PAX3):c.256A>T (p.Ile86Phe) Single nucleotide variant Chr2:222297043 Likely pathogenic Missense variant rs1559320299 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_181458.4(PAX3):c.1230C>G (p.Tyr410Ter) Single nucleotide variant Chr2:222202134 Pathogenic Nonsense|intron variant rs147111779 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_006941.4(SOX10):c.1169C>G (p.Ser390Ter) Single nucleotide variant Chr22:37973727 Pathogenic Nonsense|intron variant rs1569167607 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India

Indian Institutes & Variant Submission Overview
Chromosome-wise Variant Distribution