GenTIGSA Gene Database on Rare Genetic Disorders
  Beta Version

Variants from 496 rare genetic disorders, with a total of 857 reported, submitted from India

Senior-Loken syndrome

An  Autosomal recessive  mode(s) within the Eye disorders  category

Conflicting classifications of pathogenicity 1
Pathogenic 1
Pathogenic/Likely pathogenic 3

Variant name Variant type Germline classification Molecular consequence Grch38 Location dbSNP_ID Submitter
NM_025114.4(CEP290):c.4805C>T (p.Thr1602Met) single nucleotide variant Conflicting classifications of pathogenicity missense variant Chr12:88083854 rs369451049 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
.Neuberg Centre For Genomic Medicine, NCGM
NM_025114.4(CEP290):c.5745dup (p.Lys1916Ter) Duplication Pathogenic/Likely pathogenic nonsense Chr12:88071890 - 88071891 rs751361090 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics
NM_025114.4(CEP290):c.5668G>T (p.Gly1890Ter) single nucleotide variant Pathogenic/Likely pathogenic nonsense Chr12:88077263 rs137852832 .Institute of Medical Genetics and Genomics, Sir Ganga Ram Hospital
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
.Neuberg Centre For Genomic Medicine, NCGM
.Suma Genomics
NM_000784.4(CYP27A1):c.646+1G>A single nucleotide variant Pathogenic/Likely pathogenic splice donor variant Chr2:218812422 rs79535262 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
.Neuberg Centre For Genomic Medicine, NCGM
NM_001023570.4(IQCB1):c.1465C>T (p.Arg489Ter) single nucleotide variant Pathogenic nonsense|non-coding transcript variant Chr3:121772659 rs373909351 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India

Graph displaying all Indian institutes, the rare genetic disorders they studied, and the variants submitted to ClinVar