GenTIGSA Gene Database on Rare Genetic Disorders

Variants in ClinVar from 539 of 916 Rare Genetic Disorders of GenTIGS

Noonan syndrome

An  Autosomal dominant  mode(s) within the Neurodevelopmental disorders  category

Conflicting classifications of pathogenicity 1
Pathogenic 7
Pathogenic/Likely pathogenic 1
Uncertain significance 3

Variant name Variant type GRCH38 location Germline classification Molecular consequence dbSNP_ID Submitter
NM_004333.6(BRAF):c.1397G>A (p.Gly466Glu) Single nucleotide variant Chr7:140781611 Conflicting classifications of pathogenicity Missense variant rs121913351 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_005343.4(HRAS):c.37G>T (p.Gly13Cys) Single nucleotide variant Chr11:534286 Pathogenic Missense variant|5 prime UTR variant rs104894228 .Lifecell International Pvt. Ltd
NM_006767.4(LZTR1):c.824G>A (p.Arg275Gln) Single nucleotide variant Chr22:20991660 Uncertain significance Missense variant rs778001313 .Pediatrics Genetics, Post Graduate Institute of Medical Education and Research
NM_002745.5(MAPK1):c.128A>T (p.Tyr43Phe) Single nucleotide variant Chr22:21807838 Uncertain significance Missense variant .Pediatrics Genetics, Post Graduate Institute of Medical Education and Research
NM_001042492.3(NF1):c.6772C>T (p.Arg2258Ter) Single nucleotide variant Chr17:31338092 Pathogenic Nonsense rs876658541 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
.Suma Genomics
NM_002524.5(NRAS):c.35G>A (p.Gly12Asp) Single nucleotide variant Chr1:114716126 Pathogenic/Likely pathogenic Missense variant rs121913237 .Lifecell International Pvt. Ltd
NM_002834.5(PTPN11):c.124A>G (p.Thr42Ala) Single nucleotide variant Chr12:112446385 Pathogenic Missense variant rs397507501 .Lifecell International Pvt. Ltd
.Molecular Genetics, Centre for Human Genetics
.Neuberg Centre For Genomic Medicine, NCGM
NM_002834.5(PTPN11):c.1403C>T (p.Thr468Met) Single nucleotide variant Chr12:112488466 Pathogenic Missense variant rs121918457 .Lifecell International Pvt. Ltd
.Neuberg Centre For Genomic Medicine, NCGM
NM_002834.5(PTPN11):c.922A>G (p.Asn308Asp) Single nucleotide variant Chr12:112477719 Pathogenic Missense variant rs28933386 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
.Lifecell International Pvt. Ltd
.Molecular Genetics, Centre for Human Genetics
.Neuberg Centre For Genomic Medicine, NCGM
.Suma Genomics
NM_006912.6(RIT1):c.170C>G (p.Ala57Gly) Single nucleotide variant Chr1:155904798 Pathogenic Missense variant rs672601334 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_005633.4(SOS1):c.806T>C (p.Met269Thr) Single nucleotide variant Chr2:39051202 Pathogenic Missense variant rs137852813 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics
.GenePathDx, GenePath diagnostics
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_006939.4(SOS2):c.3303T>G (p.Ser1101Arg) Single nucleotide variant Chr14:50130535 Uncertain significance Missense variant rs1317870927 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics

Indian Institutes & Variant Submission Overview
Chromosome-wise Variant Distribution