An
Autosomal recessive
mode(s) within the
Nephrological disorders
category
Conflicting classifications of pathogenicity
3
Pathogenic
5
Pathogenic/Likely pathogenic
4
Uncertain significance
3
| Variant name | Variant type | GRCH38 location | Germline classification | Molecular consequence | dbSNP_ID | Submitter |
|---|---|---|---|---|---|---|
| NM_025114.4(CEP290):c.4805C>T (p.Thr1602Met) | Single nucleotide variant | Chr12:88083854 | Conflicting classifications of pathogenicity | Missense variant | rs369451049 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India .Neuberg Centre For Genomic Medicine, NCGM |
| NM_025114.4(CEP290):c.5745dup (p.Lys1916Ter) | Duplication | Chr12:88071890 - 88071891 | Pathogenic/Likely pathogenic | Nonsense | rs751361090 |
.Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics |
| NM_025114.4(CEP290):c.5668G>T (p.Gly1890Ter) | Single nucleotide variant | Chr12:88077263 | Pathogenic/Likely pathogenic | Nonsense | rs137852832 |
.Institute of Medical Genetics and Genomics, Sir Ganga Ram Hospital .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India .Neuberg Centre For Genomic Medicine, NCGM .Suma Genomics |
| NM_016356.5(DCDC2):c.967G>C (p.Gly323Arg) | Single nucleotide variant | Chr6:24205058 | Uncertain significance | Missense variant | rs146587418 |
.Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics |
| NM_014425.5(INVS):c.796+5G>A | Single nucleotide variant | Chr9:100240245 | Conflicting classifications of pathogenicity | Intron variant | rs1272619479 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India |
| NM_014425.5(INVS):c.1789C>T (p.Arg597Ter) | Single nucleotide variant | Chr9:100284324 | Pathogenic/Likely pathogenic | Nonsense|non-coding transcript variant | rs755288504 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India |
| NM_014425.5(INVS):c.2719C>T (p.Arg907Ter) | Single nucleotide variant | Chr9:100292976 | Pathogenic | Nonsense|non-coding transcript variant | rs267607185 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India |
| NM_001023570.4(IQCB1):c.1465C>T (p.Arg489Ter) | Single nucleotide variant | Chr3:121772659 | Pathogenic | Nonsense|non-coding transcript variant | rs373909351 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India |
| NM_001128178.3(NPHP1):c.1084-1G>T | Single nucleotide variant | Chr2:110150257 | Pathogenic | Splice acceptor variant | rs1458494785 |
.Genetics laboratory, Department of Obstetrics & Gynae, Institute of Kidney Diseases & Research Centre Dr. H.L. Trivedi Institute Of Transplantation Sciences .Neuberg Centre For Genomic Medicine, NCGM |
| NM_014994.3(MAPKBP1):c.4375C>T (p.Arg1459Ter) | Single nucleotide variant | Chr15:41825284 | Pathogenic | Nonsense|non-coding transcript variant | rs1057519304 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India |
| NM_001128178.3(NPHP1):c.1352+5G>A | Single nucleotide variant | Chr2:110146748 | Uncertain significance | Intron variant | rs1681080526 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India |
| NM_015102.5(NPHP4):c.517C>T (p.Gln173Ter) | Single nucleotide variant | Chr1:5967299 | Pathogenic | 5 prime UTR variant|nonsense|non-coding transcript variant | rs997408852 |
.Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics |
| NM_153704.6(TMEM67):c.514C>T (p.Arg172Ter) | Single nucleotide variant | Chr8:93765413 | Pathogenic/Likely pathogenic | Nonsense|non-coding transcript variant | rs765468645 |
.Institute of Medical Genetics and Genomics, Sir Ganga Ram Hospital |
| NM_153704.6(TMEM67):c.2086C>T (p.Leu696Phe) | Single nucleotide variant | Chr8:93797456 | Conflicting classifications of pathogenicity | Missense variant|non-coding transcript variant | rs863225238 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India |
| NM_001379286.1(ZNF423):c.848C>T (p.Thr283Met) | Single nucleotide variant | Chr16:49638328 | Uncertain significance | Missense variant | rs553506281 |
.Genetics laboratory, Department of Obstetrics & Gynae, Institute of Kidney Diseases & Research Centre Dr. H.L. Trivedi Institute Of Transplantation Sciences .Neuberg Centre For Genomic Medicine, NCGM |
Indian Institutes & Variant Submission Overview
Chromosome-wise Variant Distribution