Mucopolysaccharidosis, MPS-IV-A
An Autosomal recessive mode(s) within the Metabolic disorders/Lysosomal storage disorders category
Conflicting classifications of pathogenicity
6
Likely pathogenic
4
Pathogenic
3
Pathogenic/Likely pathogenic
9
Uncertain significance
1
| Variant name | Variant type | GRCH38 location | Germline classification | Molecular consequence | dbSNP_ID | Submitter |
|---|---|---|---|---|---|---|
| NM_000512.5(GALNS):c.1445C>T (p.Ala482Val) | Single nucleotide variant | Chr16:88818044 | Likely pathogenic | Missense variant | rs1909820489 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India |
| NM_000512.5(GALNS):c.791G>A (p.Ser264Asn) | Single nucleotide variant | Chr16:88835320 | Likely pathogenic | Missense variant | rs2143001182 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India |
| NM_000512.5(GALNS):c.1286C>T (p.Thr429Ile) | Single nucleotide variant | Chr16:88822667 | Uncertain significance | Missense variant | rs768180795 |
.Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India |
| NM_000512.5(GALNS):c.647T>C (p.Phe216Ser) | Single nucleotide variant | Chr16:88835836 | Pathogenic/Likely pathogenic | Missense variant | rs747805226 |
.Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics .Neuberg Centre For Genomic Medicine, NCGM |
| NM_000512.5(GALNS):c.571T>G (p.Tyr191Asp) | Single nucleotide variant | Chr16:88836263 | Conflicting classifications of pathogenicity | Missense variant | rs2143001744 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India |
| NM_000512.5(GALNS):c.562G>A (p.Gly188Ser) | Single nucleotide variant | Chr16:88837626 | Conflicting classifications of pathogenicity | Missense variant | rs2143002317 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India |
| NM_000512.5(GALNS):c.95A>C (p.Asn32Thr) | Single nucleotide variant | Chr16:88856783 | Conflicting classifications of pathogenicity | Missense variant|5 prime UTR variant | rs773933657 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India |
| NM_000512.5(GALNS):c.752G>A (p.Arg251Gln) | Single nucleotide variant | Chr16:88835731 | Pathogenic/Likely pathogenic | Missense variant | rs1199639828 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India |
| NM_000512.5(GALNS):c.986A>C (p.His329Pro) | Single nucleotide variant | Chr16:88832014 | Conflicting classifications of pathogenicity | Missense variant | rs760892654 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India .Neuberg Centre For Genomic Medicine, NCGM |
| NM_000512.5(GALNS):c.121-7C>G | Single nucleotide variant | Chr16:88842836 | Conflicting classifications of pathogenicity | Intron variant | rs1004936255 |
.Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics |
| NM_000512.5(GALNS):c.374C>T (p.Pro125Leu) | Single nucleotide variant | Chr16:88841040 | Pathogenic/Likely pathogenic | Missense variant|5 prime UTR variant | rs746949976 |
.Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics |
| NM_000512.5(GALNS):c.235T>C (p.Cys79Arg) | Single nucleotide variant | Chr16:88842715 | Pathogenic/Likely pathogenic | Missense variant|intron variant | rs1478665723 |
.Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India .Neuberg Centre For Genomic Medicine, NCGM |
| NM_000512.5(GALNS):c.764G>C (p.Gly255Ala) | Single nucleotide variant | Chr16:88835347 | Likely pathogenic | Missense variant | rs1912009292 |
.Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics |
| NM_000512.5(GALNS):c.452C>T (p.Pro151Leu) | Single nucleotide variant | Chr16:88837736 | Pathogenic/Likely pathogenic | Missense variant|5 prime UTR variant | rs559063128 |
.Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics .Neuberg Centre For Genomic Medicine, NCGM |
| NM_000512.5(GALNS):c.1049T>C (p.Leu350Pro) | Single nucleotide variant | Chr16:88826792 | Likely pathogenic | Missense variant | rs1910973930 |
.Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics .Neuberg Centre For Genomic Medicine, NCGM |
| NM_000512.5(GALNS):c.836ACA[1] (p.Asn280del) | Microsatellite | Chr16:88835270 - 88835272 | Conflicting classifications of pathogenicity | Inframe_deletion | rs1389218771 |
.Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics |
| NM_000512.5(GALNS):c.1241dup (p.Ile416fs) | Duplication | Chr16:88824767 - 88824768 | Pathogenic | Frameshift variant | rs1910631809 |
.Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics |
| NM_000512.5(GALNS):c.116A>G (p.Asp39Gly) | Single nucleotide variant | Chr16:88856762 | Pathogenic/Likely pathogenic | Missense variant|5 prime UTR variant | rs1967935882 |
.Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics |
| NM_000512.5(GALNS):c.230C>G (p.Pro77Arg) | Single nucleotide variant | Chr16:88842720 | Pathogenic/Likely pathogenic | Missense variant|intron variant | rs1422505598 |
.Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics .Neuberg Centre For Genomic Medicine, NCGM |
| NM_000512.5(GALNS):c.181C>T (p.Arg61Trp) | Single nucleotide variant | Chr16:88842769 | Pathogenic/Likely pathogenic | Missense variant|intron variant | rs145798311 |
.Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India |
| NM_000512.5(GALNS):c.139G>A (p.Gly47Arg) | Single nucleotide variant | Chr16:88842811 | Pathogenic/Likely pathogenic | Missense variant|intron variant | rs199638097 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India |
| NM_000512.5(GALNS):c.415G>A (p.Gly139Ser) | Single nucleotide variant | Chr16:88840999 | Pathogenic | Missense variant|5 prime UTR variant | rs146093755 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India |
| NM_000512.5(GALNS):c.29G>A (p.Trp10Ter) | Single nucleotide variant | Chr16:88856849 | Pathogenic | Nonsense|5 prime UTR variant | rs1967945316 |
.Lifecell International Pvt. Ltd |
Indian Institutes & Variant Submission Overview
Chromosome-wise Variant Distribution