GenTIGSA Gene Database on Rare Genetic Disorders

Variants in ClinVar from 539 of 916 Rare Genetic Disorders of GenTIGS

Mucopolysaccharidosis, MPS-IV-A

An  Autosomal recessive  mode(s) within the Metabolic disorders/Lysosomal storage disorders  category

Conflicting classifications of pathogenicity 6
Likely pathogenic 4
Pathogenic 3
Pathogenic/Likely pathogenic 9
Uncertain significance 1

Variant name Variant type GRCH38 location Germline classification Molecular consequence dbSNP_ID Submitter
NM_000512.5(GALNS):c.1445C>T (p.Ala482Val) Single nucleotide variant Chr16:88818044 Likely pathogenic Missense variant rs1909820489 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_000512.5(GALNS):c.791G>A (p.Ser264Asn) Single nucleotide variant Chr16:88835320 Likely pathogenic Missense variant rs2143001182 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_000512.5(GALNS):c.1286C>T (p.Thr429Ile) Single nucleotide variant Chr16:88822667 Uncertain significance Missense variant rs768180795 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_000512.5(GALNS):c.647T>C (p.Phe216Ser) Single nucleotide variant Chr16:88835836 Pathogenic/Likely pathogenic Missense variant rs747805226 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics
.Neuberg Centre For Genomic Medicine, NCGM
NM_000512.5(GALNS):c.571T>G (p.Tyr191Asp) Single nucleotide variant Chr16:88836263 Conflicting classifications of pathogenicity Missense variant rs2143001744 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_000512.5(GALNS):c.562G>A (p.Gly188Ser) Single nucleotide variant Chr16:88837626 Conflicting classifications of pathogenicity Missense variant rs2143002317 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_000512.5(GALNS):c.95A>C (p.Asn32Thr) Single nucleotide variant Chr16:88856783 Conflicting classifications of pathogenicity Missense variant|5 prime UTR variant rs773933657 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_000512.5(GALNS):c.752G>A (p.Arg251Gln) Single nucleotide variant Chr16:88835731 Pathogenic/Likely pathogenic Missense variant rs1199639828 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_000512.5(GALNS):c.986A>C (p.His329Pro) Single nucleotide variant Chr16:88832014 Conflicting classifications of pathogenicity Missense variant rs760892654 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
.Neuberg Centre For Genomic Medicine, NCGM
NM_000512.5(GALNS):c.121-7C>G Single nucleotide variant Chr16:88842836 Conflicting classifications of pathogenicity Intron variant rs1004936255 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics
NM_000512.5(GALNS):c.374C>T (p.Pro125Leu) Single nucleotide variant Chr16:88841040 Pathogenic/Likely pathogenic Missense variant|5 prime UTR variant rs746949976 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics
NM_000512.5(GALNS):c.235T>C (p.Cys79Arg) Single nucleotide variant Chr16:88842715 Pathogenic/Likely pathogenic Missense variant|intron variant rs1478665723 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
.Neuberg Centre For Genomic Medicine, NCGM
NM_000512.5(GALNS):c.764G>C (p.Gly255Ala) Single nucleotide variant Chr16:88835347 Likely pathogenic Missense variant rs1912009292 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics
NM_000512.5(GALNS):c.452C>T (p.Pro151Leu) Single nucleotide variant Chr16:88837736 Pathogenic/Likely pathogenic Missense variant|5 prime UTR variant rs559063128 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics
.Neuberg Centre For Genomic Medicine, NCGM
NM_000512.5(GALNS):c.1049T>C (p.Leu350Pro) Single nucleotide variant Chr16:88826792 Likely pathogenic Missense variant rs1910973930 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics
.Neuberg Centre For Genomic Medicine, NCGM
NM_000512.5(GALNS):c.836ACA[1] (p.Asn280del) Microsatellite Chr16:88835270 - 88835272 Conflicting classifications of pathogenicity Inframe_deletion rs1389218771 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics
NM_000512.5(GALNS):c.1241dup (p.Ile416fs) Duplication Chr16:88824767 - 88824768 Pathogenic Frameshift variant rs1910631809 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics
NM_000512.5(GALNS):c.116A>G (p.Asp39Gly) Single nucleotide variant Chr16:88856762 Pathogenic/Likely pathogenic Missense variant|5 prime UTR variant rs1967935882 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics
NM_000512.5(GALNS):c.230C>G (p.Pro77Arg) Single nucleotide variant Chr16:88842720 Pathogenic/Likely pathogenic Missense variant|intron variant rs1422505598 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics
.Neuberg Centre For Genomic Medicine, NCGM
NM_000512.5(GALNS):c.181C>T (p.Arg61Trp) Single nucleotide variant Chr16:88842769 Pathogenic/Likely pathogenic Missense variant|intron variant rs145798311 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_000512.5(GALNS):c.139G>A (p.Gly47Arg) Single nucleotide variant Chr16:88842811 Pathogenic/Likely pathogenic Missense variant|intron variant rs199638097 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_000512.5(GALNS):c.415G>A (p.Gly139Ser) Single nucleotide variant Chr16:88840999 Pathogenic Missense variant|5 prime UTR variant rs146093755 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_000512.5(GALNS):c.29G>A (p.Trp10Ter) Single nucleotide variant Chr16:88856849 Pathogenic Nonsense|5 prime UTR variant rs1967945316 .Lifecell International Pvt. Ltd

Indian Institutes & Variant Submission Overview
Chromosome-wise Variant Distribution