An
Autosomal recessive
mode(s) within the
Metabolic disorders/Lysosomal storage disorders
category
Conflicting classifications of pathogenicity
1
Likely pathogenic
2
Pathogenic
5
Pathogenic/Likely pathogenic
2
| Variant name | Variant type | GRCH38 location | Germline classification | Molecular consequence | dbSNP_ID | Submitter |
|---|---|---|---|---|---|---|
| NM_000487.6(ARSA):c.937dup (p.Arg313fs) | Duplication | Chr22:50626195 - 50626196 | Likely pathogenic | Frameshift variant | rs2518326922 |
.Lifecell International Pvt. Ltd |
| NM_000487.6(ARSA):c.746T>G (p.Phe249Cys) | Single nucleotide variant | Chr22:50626699 | Likely pathogenic | Missense variant | rs199476384 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India .Neuberg Centre For Genomic Medicine, NCGM |
| NM_000487.6(ARSA):c.582del (p.Trp195fs) | Deletion | Chr22:50626936 | Pathogenic | Frameshift variant | rs2082680996 |
.Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics |
| NM_000487.6(ARSA):c.937C>T (p.Arg313Ter) | Single nucleotide variant | Chr22:50626196 | Pathogenic | Nonsense | rs551472773 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India |
| NM_000487.6(ARSA):c.979+1G>A | Single nucleotide variant | Chr22:50626153 | Pathogenic | Splice donor variant | rs754722529 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India |
| NM_000487.6(ARSA):c.925G>A (p.Glu309Lys) | Single nucleotide variant | Chr22:50626208 | Pathogenic | Missense variant | rs199476360 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India |
| NM_000487.6(ARSA):c.1115G>A (p.Arg372Gln) | Single nucleotide variant | Chr22:50625674 | Pathogenic/Likely pathogenic | Missense variant | rs74315477 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India |
| NM_000487.6(ARSA):c.931G>A (p.Gly311Ser) | Single nucleotide variant | Chr22:50626202 | Conflicting classifications of pathogenicity | Missense variant | rs74315459 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India |
| NM_000487.6(ARSA):c.465+1G>A | Single nucleotide variant | Chr22:50627165 | Pathogenic | Splice donor variant | rs80338815 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India |
| NM_002778.4(PSAP):c.679_681del (p.Lys227del) | Deletion | Chr10:71828053 - 71828055 | Pathogenic/Likely pathogenic | Inframe_deletion | rs1431844269 |
.Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India .Neuberg Centre For Genomic Medicine, NCGM |
Indian Institutes & Variant Submission Overview
Chromosome-wise Variant Distribution