GenTIGSA Gene Database on Rare Genetic Disorders

Variants in ClinVar from 539 of 916 Rare Genetic Disorders of GenTIGS

Metachromatic leukodystrophy

An  Autosomal recessive  mode(s) within the Metabolic disorders/Lysosomal storage disorders  category

Conflicting classifications of pathogenicity 1
Likely pathogenic 2
Pathogenic 5
Pathogenic/Likely pathogenic 2

Variant name Variant type GRCH38 location Germline classification Molecular consequence dbSNP_ID Submitter
NM_000487.6(ARSA):c.937dup (p.Arg313fs) Duplication Chr22:50626195 - 50626196 Likely pathogenic Frameshift variant rs2518326922 .Lifecell International Pvt. Ltd
NM_000487.6(ARSA):c.746T>G (p.Phe249Cys) Single nucleotide variant Chr22:50626699 Likely pathogenic Missense variant rs199476384 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
.Neuberg Centre For Genomic Medicine, NCGM
NM_000487.6(ARSA):c.582del (p.Trp195fs) Deletion Chr22:50626936 Pathogenic Frameshift variant rs2082680996 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics
NM_000487.6(ARSA):c.937C>T (p.Arg313Ter) Single nucleotide variant Chr22:50626196 Pathogenic Nonsense rs551472773 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_000487.6(ARSA):c.979+1G>A Single nucleotide variant Chr22:50626153 Pathogenic Splice donor variant rs754722529 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_000487.6(ARSA):c.925G>A (p.Glu309Lys) Single nucleotide variant Chr22:50626208 Pathogenic Missense variant rs199476360 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_000487.6(ARSA):c.1115G>A (p.Arg372Gln) Single nucleotide variant Chr22:50625674 Pathogenic/Likely pathogenic Missense variant rs74315477 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_000487.6(ARSA):c.931G>A (p.Gly311Ser) Single nucleotide variant Chr22:50626202 Conflicting classifications of pathogenicity Missense variant rs74315459 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_000487.6(ARSA):c.465+1G>A Single nucleotide variant Chr22:50627165 Pathogenic Splice donor variant rs80338815 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_002778.4(PSAP):c.679_681del (p.Lys227del) Deletion Chr10:71828053 - 71828055 Pathogenic/Likely pathogenic Inframe_deletion rs1431844269 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
.Neuberg Centre For Genomic Medicine, NCGM

Indian Institutes & Variant Submission Overview
Chromosome-wise Variant Distribution