An
Autosomal dominant
mode(s) within the
Cancer disorders
category
Conflicting classifications of pathogenicity
2
Likely pathogenic
2
Pathogenic
6
Uncertain significance
1
| Variant name | Variant type | GRCH38 location | Germline classification | Molecular consequence | dbSNP_ID | Submitter |
|---|---|---|---|---|---|---|
| NM_000249.4(MLH1):c.454-13A>G | Single nucleotide variant | Chr3:37008801 | Likely pathogenic | Intron variant | rs267607749 | |
| NM_000249.4(MLH1):c.306G>T (p.Glu102Asp) | Single nucleotide variant | Chr3:37001053 | Uncertain significance | Missense variant|5 prime UTR variant|intron variant | rs63751665 |
.Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics .Neuberg Centre For Genomic Medicine, NCGM |
| NM_000249.4(MLH1):c.2038T>G (p.Cys680Gly) | Single nucleotide variant | Chr3:37048952 | Conflicting classifications of pathogenicity | Missense variant|intron variant | rs63750809 |
.Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics .Neuberg Centre For Genomic Medicine, NCGM |
| NM_000249.4(MLH1):c.2038T>C (p.Cys680Arg) | Single nucleotide variant | Chr3:37048952 | Likely pathogenic | Missense variant|intron variant | rs63750809 | |
| NM_000249.4(MLH1):c.156del (p.Glu53fs) | Deletion | Chr3:36996656 | Pathogenic | Frameshift variant|5 prime UTR variant|intron variant | rs63750028 |
.Biotechnology, Institute of Science, Nirma University .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics .Neuberg Centre For Genomic Medicine, NCGM |
| NM_000251.3(MSH2):c.294T>A (p.Tyr98Ter) | Single nucleotide variant | Chr2:47408483 | Pathogenic | Nonsense | rs763872353 |
.Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics |
| NM_000251.3(MSH2):c.274C>G (p.Leu92Val) | Single nucleotide variant | Chr2:47408463 | Conflicting classifications of pathogenicity | Missense variant | rs587779154 |
.Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics |
| NM_000251.3(MSH2):c.1226_1227del (p.Gln409fs) | Deletion | Chr2:47429891 - 47429892 | Pathogenic | Frameshift variant | rs63750086 |
.GenePathDx, GenePath diagnostics |
| NM_000251.3(MSH2):c.1165C>T (p.Arg389Ter) | Single nucleotide variant | Chr2:47429830 | Pathogenic | Nonsense | rs587779075 |
.Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India .Neuberg Centre For Genomic Medicine, NCGM |
| NM_000535.7(PMS2):c.1239dup (p.Asp414fs) | Duplication | Chr7:5987525 - 5987526 | Pathogenic | Frameshift variant|non-coding transcript variant | rs267608159 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India |
| NM_000535.7(PMS2):c.2404C>T (p.Arg802Ter) | Single nucleotide variant | Chr7:5977629 | Pathogenic | Nonsense|non-coding transcript variant | rs63751466 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India |
Indian Institutes & Variant Submission Overview
Chromosome-wise Variant Distribution