GenTIGSA Gene Database on Rare Genetic Disorders
  Beta Version

Variants from 536 rare genetic disorders, with a total of 897 reported, submitted from India

Leigh syndrome

An  Autosomal recessive, X-linked dominant, MT inheritance  mode(s) within the Neurodegenerative disorders  category

Benign 1
Conflicting classifications of pathogenicity 1
Pathogenic 2
Pathogenic/Likely pathogenic 2
Uncertain significance 1

Variant name Variant type GRCH38 location Germline classification Molecular consequence dbSNP_ID Submitter
NM_152416.3(NDUFAF6):c.[328G>T];[611C>T] CompoundHeterozygote Chr: Pathogenic .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics
NC_012920.1(MT-CYB):m.14766C>T Single nucleotide variant ChrMT:14766 Benign rs193302980 .Department of Zoology Govt. MVM College
.Genomics Division, Defence Institute of Physiology and Allied Sciences
NM_004168.4(SDHA):c.448G>A (p.Val150Met) Single nucleotide variant Chr5:225554 Uncertain significance Missense variant|intron variant rs542980860 .Laboratory of Molecular and Cytogenetics, Department of Anatomy, All India Institute of Medical Sciences (AIIMS)
NM_003172.4(SURF1):c.535dup (p.Arg179fs) Duplication Chr9:133352746 - 133352747 Pathogenic/Likely pathogenic Frameshift variant rs1836465016 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_003172.4(SURF1):c.833+1G>A Single nucleotide variant Chr9:133352060 Pathogenic Splice donor variant rs782609482 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics
NM_003172.4(SURF1):c.799_800del (p.Leu267fs) Microsatellite Chr9:133352094 - 133352095 Pathogenic/Likely pathogenic Frameshift variant rs864309500 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
.Neuberg Centre For Genomic Medicine, NCGM
NM_003172.4(SURF1):c.324-11T>G Single nucleotide variant Chr9:133353951 Conflicting classifications of pathogenicity Intron variant rs375398247 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
.Lifecell International Pvt. Ltd

Graph displaying all Indian institutes, the rare genetic disorders they studied, and the variants submitted to ClinVar