GenTIGSA Gene Database on Rare Genetic Disorders

Variants in ClinVar from 539 of 916 Rare Genetic Disorders of GenTIGS

Leber congenital amaurosis

An  Autosomal recessive  mode(s) within the Eye disorders  category

Conflicting classifications of pathogenicity 3
Likely pathogenic 4
Pathogenic/Likely pathogenic 2
Uncertain significance 1

Variant name Variant type GRCH38 location Germline classification Molecular consequence dbSNP_ID Submitter
NM_025114.4(CEP290):c.4805C>T (p.Thr1602Met) Single nucleotide variant Chr12:88083854 Conflicting classifications of pathogenicity Missense variant rs369451049 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
.Neuberg Centre For Genomic Medicine, NCGM
NM_025114.4(CEP290):c.5745dup (p.Lys1916Ter) Duplication Chr12:88071890 - 88071891 Pathogenic/Likely pathogenic Nonsense rs751361090 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics
NM_025114.4(CEP290):c.5668G>T (p.Gly1890Ter) Single nucleotide variant Chr12:88077263 Pathogenic/Likely pathogenic Nonsense rs137852832 .Institute of Medical Genetics and Genomics, Sir Ganga Ram Hospital
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
.Neuberg Centre For Genomic Medicine, NCGM
.Suma Genomics
NM_152443.3(RDH12):c.693_694insACTGCGTCCGCTCTGAGCTGGC (p.Val232fs) Insertion Chr14:67729222 - 67729223 Likely pathogenic Frameshift variant .SN ONGC Dept of Genetics and Molecular biology Vision Research Foundation
NM_000180.4(GUCY2D):c.2210AAG[1] (p.Glu738del) Microsatellite Chr17:8013199 - 8013201 Likely pathogenic Inframe_deletion rs2151802832 .Pediatric Genetics, Postgraduate Institute of Medical Education and Research, Chandigarh (PGIMER)
NM_000180.4(GUCY2D):c.1937T>C (p.Leu646Pro) Single nucleotide variant Chr17:8012331 Likely pathogenic Missense variant rs1975868606 .Pediatrics Genetics, Post Graduate Institute of Medical Education and Research
NM_004744.5(LRAT):c.*98C>T Single nucleotide variant Chr4:154749234 Conflicting classifications of pathogenicity 3 prime UTR variant rs529360609 .Diagnostics Services (NGS), CSIR - Centre For Cellular And Molecular Biology
NM_017777.4(MKS1):c.958G>A (p.Val320Ile) Single nucleotide variant Chr17:58210980 Conflicting classifications of pathogenicity Missense variant rs386834053 .Diagnostics Division, CENTRE FOR DNA FINGERPRINTING AND DIAGNOSTICS
NM_020366.4(RPGRIP1):c.903_906+17del Deletion Chr14:21307830 - 21307850 Likely pathogenic Splice donor variant rs886039911 .Diagnostics Division, CENTRE FOR DNA FINGERPRINTING AND DIAGNOSTICS
NM_001346022.3(USP45):c.1636A>T (p.Lys546Ter) Single nucleotide variant Chr6:99446136 Uncertain significance Nonsense|non-coding transcript variant rs189281869 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics

Indian Institutes & Variant Submission Overview
Chromosome-wise Variant Distribution