GenTIGSA Gene Database on Rare Genetic Disorders

Variants in ClinVar from 539 of 916 Rare Genetic Disorders of GenTIGS

Kleefstra syndrome

An  Autosomal dominant  mode(s) within the Neurodevelopmental disorders  category

Conflicting classifications of pathogenicity 1
Likely benign 1
Likely pathogenic 1
Uncertain significance 3

Variant name Variant type GRCH38 location Germline classification Molecular consequence dbSNP_ID Submitter
NM_024757.5(EHMT1):c.3461+1G>C Single nucleotide variant Chr9:137817526 Likely pathogenic Splice donor variant rs2538750175 .Lifecell International Pvt. Ltd
NM_024757.5(EHMT1):c.1332G>A (p.Arg444=) Single nucleotide variant Chr9:137754254 Likely benign Synonymous variant rs1588533740 .Centre for Medical Genetics, Mumbai
NM_170606.3(KMT2C):c.13273G>A (p.Asp4425Asn) Single nucleotide variant Chr7:152148654 Uncertain significance Missense variant rs2129095473 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics
NM_170606.3(KMT2C):c.3902C>T (p.Ser1301Phe) Single nucleotide variant Chr7:152205165 Uncertain significance Missense variant rs2129137318 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics
NM_170606.3(KMT2C):c.9291G>A (p.Met3097Ile) Single nucleotide variant Chr7:152174214 Uncertain significance Missense variant rs747180312 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics
NM_170606.3(KMT2C):c.2961C>G (p.Tyr987Ter) Single nucleotide variant Chr7:152229938 Conflicting classifications of pathogenicity Nonsense rs58528565 .Diagnostics Services (NGS), CSIR - Centre For Cellular And Molecular Biology
.Neuberg Centre For Genomic Medicine, NCGM

Indian Institutes & Variant Submission Overview
Chromosome-wise Variant Distribution