GenTIGSA Gene Database on Rare Genetic Disorders

Variants in ClinVar from 539 of 916 Rare Genetic Disorders of GenTIGS

Infantile GM1 gangliosidosis

An  Autosomal recessive  mode(s) within the Metabolic disorders/Lysosomal storage disorders  category

Likely pathogenic 3
Pathogenic 6
Pathogenic/Likely pathogenic 4
Uncertain significance 2

Variant name Variant type GRCH38 location Germline classification Molecular consequence dbSNP_ID Submitter
NM_000404.3(GLB1):c.[276G>A];[75+5G>C] CompoundHeterozygote Chr: Likely pathogenic .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics
NM_000404.4(GLB1):c.1099C>T (p.Pro367Ser) Single nucleotide variant Chr3:33024295 Uncertain significance Missense variant rs1697636883 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_000404.4(GLB1):c.266A>T (p.His89Leu) Single nucleotide variant Chr3:33068950 Pathogenic Missense variant|intron variant rs2125548832 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_000404.4(GLB1):c.425_428del (p.Lys142fs) Deletion Chr3:33068259 - 33068262 Pathogenic Frameshift variant|intron variant rs1699765928 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_000404.4(GLB1):c.1010T>C (p.Leu337Pro) Single nucleotide variant Chr3:33046178 Pathogenic/Likely pathogenic Missense variant rs752177002 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_000404.4(GLB1):c.407C>T (p.Pro136Leu) Single nucleotide variant Chr3:33068280 Likely pathogenic Missense variant|intron variant rs1575471281 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics
NM_000404.4(GLB1):c.385G>C (p.Glu129Gln) Single nucleotide variant Chr3:33068831 Likely pathogenic Missense variant|intron variant rs886042079 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics
NM_000404.4(GLB1):c.545C>G (p.Thr182Arg) Single nucleotide variant Chr3:33065470 Uncertain significance Missense variant rs758577863 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics
NM_000404.4(GLB1):c.65_75+1del Deletion Chr3:33097010 - 33097021 Pathogenic/Likely pathogenic 5 prime UTR variant|splice donor variant rs1382394474 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics
.Neuberg Centre For Genomic Medicine, NCGM
NM_000404.4(GLB1):c.1325G>A (p.Arg442Gln) Single nucleotide variant Chr3:33018470 Pathogenic/Likely pathogenic Missense variant rs564428355 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
.Neuberg Centre For Genomic Medicine, NCGM
NM_000404.4(GLB1):c.276G>A (p.Trp92Ter) Single nucleotide variant Chr3:33068940 Pathogenic Nonsense|intron variant rs748830051 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics
NM_000404.4(GLB1):c.1769G>A (p.Arg590His) Single nucleotide variant Chr3:32997310 Pathogenic/Likely pathogenic Missense variant|intron variant rs398123351 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_000404.4(GLB1):c.202C>T (p.Arg68Trp) Single nucleotide variant Chr3:33072587 Pathogenic Missense variant rs72555370 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_000404.4(GLB1):c.1369C>T (p.Arg457Ter) Single nucleotide variant Chr3:33016819 Pathogenic Nonsense rs72555359 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
.Neuberg Centre For Genomic Medicine, NCGM
NM_000404.4(GLB1):c.75+2dup Duplication Chr3:33097008 - 33097009 Pathogenic 5 prime UTR variant|splice donor variant rs587776525 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
.Neuberg Centre For Genomic Medicine, NCGM

Indian Institutes & Variant Submission Overview
Chromosome-wise Variant Distribution