An
Autosomal recessive
mode(s) within the
Metabolic disorders
category
Conflicting classifications of pathogenicity
1
Likely pathogenic
2
Pathogenic
4
Pathogenic/Likely pathogenic
4
Uncertain significance
3
| Variant name | Variant type | GRCH38 location | Germline classification | Molecular consequence | dbSNP_ID | Submitter |
|---|---|---|---|---|---|---|
| NM_000159.4(GCDH):c.505+5G>A | Single nucleotide variant | Chr19:12893658 | Uncertain significance | Intron variant |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India |
|
| NM_000159.4(GCDH):c.542_543del (p.Glu181fs) | Microsatellite | Chr19:12896026 - 12896027 | Pathogenic | Frameshift variant|non-coding transcript variant | rs2145950197 |
.Lifecell International Pvt. Ltd |
| NM_000159.4(GCDH):c.150G>A (p.Trp50Ter) | Single nucleotide variant | Chr19:12891853 | Pathogenic | Nonsense|non-coding transcript variant | rs1970564149 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India |
| NM_000159.4(GCDH):c.647C>T (p.Ser216Leu) | Single nucleotide variant | Chr19:12896216 | Conflicting classifications of pathogenicity | Missense variant|non-coding transcript variant | rs1449724176 |
.Lifecell International Pvt. Ltd |
| NM_000159.4(GCDH):c.511G>C (p.Gly171Arg) | Single nucleotide variant | Chr19:12895997 | Likely pathogenic | Missense variant|non-coding transcript variant | rs2145950047 |
.Lifecell International Pvt. Ltd |
| NM_000159.4(GCDH):c.1207C>T (p.His403Tyr) | Single nucleotide variant | Chr19:12897827 | Pathogenic/Likely pathogenic | Missense variant|non-coding transcript variant | rs1599619080 |
.Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics |
| NM_000159.4(GCDH):c.566G>C (p.Ser189Thr) | Single nucleotide variant | Chr19:12896052 | Uncertain significance | Missense variant|non-coding transcript variant | rs764774411 |
.Department of Biotechnology and Microbiology, Karnatak University Dharwad |
| NM_000159.4(GCDH):c.674G>C (p.Trp225Ser) | Single nucleotide variant | Chr19:12896243 | Likely pathogenic | Missense variant|non-coding transcript variant | rs1568427678 |
.Department of Biotechnology and Microbiology, Karnatak University Dharwad |
| NM_000159.4(GCDH):c.528C>G (p.Cys176Trp) | Single nucleotide variant | Chr19:12896014 | Uncertain significance | Missense variant|non-coding transcript variant | rs756345321 |
.Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics .Neuberg Centre For Genomic Medicine, NCGM |
| NM_000159.4(GCDH):c.881G>C (p.Arg294Pro) | Single nucleotide variant | Chr19:12896938 | Pathogenic | Missense variant|non-coding transcript variant | rs775606471 |
.Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics |
| NM_000159.4(GCDH):c.281G>A (p.Arg94Gln) | Single nucleotide variant | Chr19:12892125 | Pathogenic/Likely pathogenic | Missense variant|non-coding transcript variant | rs566417795 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India .Neuberg Centre For Genomic Medicine, NCGM |
| NM_000159.4(GCDH):c.1156C>T (p.Arg386Ter) | Single nucleotide variant | Chr19:12897776 | Pathogenic | Nonsense|non-coding transcript variant | rs752127949 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India .Lifecell International Pvt. Ltd .Suma Genomics |
| NM_000159.4(GCDH):c.1147C>T (p.Arg383Cys) | Single nucleotide variant | Chr19:12897767 | Pathogenic/Likely pathogenic | Missense variant|non-coding transcript variant | rs150938052 |
.Department of Biotechnology and Microbiology, Karnatak University Dharwad |
| NM_000159.4(GCDH):c.1204C>T (p.Arg402Trp) | Single nucleotide variant | Chr19:12897824 | Pathogenic/Likely pathogenic | Missense variant|non-coding transcript variant | rs121434369 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India .Neuberg Centre For Genomic Medicine, NCGM .Suma Genomics |
Indian Institutes & Variant Submission Overview
Chromosome-wise Variant Distribution