Generalized epilepsy with febrile seizures plus, type 2
An Autosomal dominant mode(s) within the Neuronal disorders category
Conflicting classifications of pathogenicity
2
Likely pathogenic
3
Pathogenic
13
Pathogenic/Likely pathogenic
3
Uncertain significance
5
| Variant name | Variant type | GRCH38 location | Germline classification | Molecular consequence | dbSNP_ID | Submitter |
|---|---|---|---|---|---|---|
| NM_001165963.4(SCN1A):c.4003-1G>C | Single nucleotide variant | Chr2:166002754 | Pathogenic | Splice acceptor variant | rs1574007140 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India |
| NM_001165963.4(SCN1A):c.5624_5630del (p.Val1875fs) | Deletion | Chr2:165991645 - 165991651 | Likely pathogenic | Frameshift variant|non-coding transcript variant | rs2105425236 |
.Lifecell International Pvt. Ltd |
| NM_001165963.4(SCN1A):c.5120T>C (p.Phe1707Ser) | Single nucleotide variant | Chr2:165992155 | Pathogenic | Missense variant|non-coding transcript variant | rs2105432236 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India |
| NM_001165963.4(SCN1A):c.4002+1G>T | Single nucleotide variant | Chr2:166009718 | Pathogenic/Likely pathogenic | Splice donor variant | rs1692153643 |
.Lifecell International Pvt. Ltd |
| NM_001165963.4(SCN1A):c.5501C>T (p.Ala1834Val) | Single nucleotide variant | Chr2:165991774 | Conflicting classifications of pathogenicity | Missense variant|non-coding transcript variant | rs780809852 |
.Lifecell International Pvt. Ltd |
| NM_001165963.4(SCN1A):c.4547C>A (p.Ser1516Ter) | Single nucleotide variant | Chr2:165996047 | Pathogenic | Nonsense|non-coding transcript variant | rs139300715 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India .Neuberg Centre For Genomic Medicine, NCGM |
| NM_001165963.4(SCN1A):c.4223G>A (p.Trp1408Ter) | Single nucleotide variant | Chr2:166002533 | Pathogenic | Nonsense|non-coding transcript variant | rs794726784 |
.Lifecell International Pvt. Ltd |
| NM_001165963.4(SCN1A):c.5536_5539del (p.Lys1846fs) | Microsatellite | Chr2:165991736 - 165991739 | Pathogenic | Frameshift variant|non-coding transcript variant | rs794726726 |
.Lifecell International Pvt. Ltd |
| NM_001165963.4(SCN1A):c.4906C>T (p.Arg1636Ter) | Single nucleotide variant | Chr2:165992369 | Pathogenic | Nonsense|non-coding transcript variant | rs199727342 |
.Lifecell International Pvt. Ltd |
| NM_001165963.4(SCN1A):c.2589+2dup | Duplication | Chr2:166039420 - 166039421 | Pathogenic/Likely pathogenic | Splice donor variant | rs2468112683 |
.Lifecell International Pvt. Ltd |
| NM_001165963.4(SCN1A):c.265del (p.Thr89fs) | Deletion | Chr2:166058688 | Likely pathogenic | Frameshift variant|5 prime UTR variant|non-coding transcript variant | rs2105918665 |
.Lifecell International Pvt. Ltd |
| NM_001165963.4(SCN1A):c.2164A>C (p.Asn722His) | Single nucleotide variant | Chr2:166042304 | Uncertain significance | Missense variant|5 prime UTR variant|non-coding transcript variant | rs1341631584 |
.Lifecell International Pvt. Ltd |
| NM_001165963.4(SCN1A):c.1719C>G (p.Ser573Arg) | Single nucleotide variant | Chr2:166043993 | Uncertain significance | Missense variant|5 prime UTR variant|non-coding transcript variant | rs748767737 |
.Lifecell International Pvt. Ltd |
| NM_001165963.4(SCN1A):c.1037C>T (p.Pro346Leu) | Single nucleotide variant | Chr2:166047760 | Likely pathogenic | Missense variant|5 prime UTR variant|non-coding transcript variant | rs2105868295 |
.Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics |
| NM_001165963.4(SCN1A):c.1133del (p.Leu378fs) | Deletion | Chr2:166047664 | Pathogenic/Likely pathogenic | Frameshift variant|non-coding transcript variant|5 prime UTR variant | rs1698004184 |
.Diagnostics Services (NGS), CSIR - Centre For Cellular And Molecular Biology .Lifecell International Pvt. Ltd |
| NM_001165963.4(SCN1A):c.2006C>T (p.Pro669Leu) | Single nucleotide variant | Chr2:166043706 | Uncertain significance | Missense variant|5 prime UTR variant|non-coding transcript variant|intron variant | rs570326929 |
.Lifecell International Pvt. Ltd |
| NM_001165963.4(SCN1A):c.36del (p.Asp12fs) | Deletion | Chr2:166073586 | Pathogenic | Frameshift variant|5 prime UTR variant|non-coding transcript variant | rs1684704927 |
.Diagnostics Services (NGS), CSIR - Centre For Cellular And Molecular Biology |
| NM_001165963.4(SCN1A):c.242A>G (p.Asp81Gly) | Single nucleotide variant | Chr2:166073380 | Conflicting classifications of pathogenicity | Missense variant|5 prime UTR variant|non-coding transcript variant | rs1684663181 |
.Diagnostics Services (NGS), CSIR - Centre For Cellular And Molecular Biology |
| NM_001165963.4(SCN1A):c.136G>A (p.Glu46Lys) | Single nucleotide variant | Chr2:166073486 | Uncertain significance | Missense variant|5 prime UTR variant|non-coding transcript variant | rs769582667 |
.Lifecell International Pvt. Ltd |
| NM_001165963.4(SCN1A):c.2552A>G (p.Asn851Ser) | Single nucleotide variant | Chr2:166039460 | Uncertain significance | Missense variant|non-coding transcript variant | rs561912072 |
.Lifecell International Pvt. Ltd .Neuberg Centre For Genomic Medicine, NCGM |
| NM_001165963.4(SCN1A):c.602+1G>A | Single nucleotide variant | Chr2:166054637 | Pathogenic | Splice donor variant | rs794726827 |
.Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics .Neuberg Centre For Genomic Medicine, NCGM |
| NM_001165963.4(SCN1A):c.2589+3A>T | Single nucleotide variant | Chr2:166039420 | Pathogenic | Intron variant | rs794726775 |
.Lifecell International Pvt. Ltd |
| NM_001165963.4(SCN1A):c.2134C>T (p.Arg712Ter) | Single nucleotide variant | Chr2:166042334 | Pathogenic | Nonsense|5 prime UTR variant|non-coding transcript variant | rs794726730 |
.Lifecell International Pvt. Ltd .Neuberg Centre For Genomic Medicine, NCGM |
| NM_001165963.4(SCN1A):c.272T>C (p.Ile91Thr) | Single nucleotide variant | Chr2:166058681 | Pathogenic | Missense variant|5 prime UTR variant|non-coding transcript variant | rs121918734 |
.Lifecell International Pvt. Ltd |
| NM_001165963.4(SCN1A):c.677C>T (p.Thr226Met) | Single nucleotide variant | Chr2:166052869 | Pathogenic | Missense variant|5 prime UTR variant|non-coding transcript variant | rs121917984 |
.Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India |
| NM_001165963.4(SCN1A):c.302G>A (p.Arg101Gln) | Single nucleotide variant | Chr2:166058651 | Pathogenic | Missense variant|5 prime UTR variant|non-coding transcript variant | rs121917918 |
.Lifecell International Pvt. Ltd |
Indian Institutes & Variant Submission Overview
Chromosome-wise Variant Distribution