GenTIGSA Gene Database on Rare Genetic Disorders

Variants in ClinVar from 539 of 916 Rare Genetic Disorders of GenTIGS

Familial cancer of breast

An  Autosomal dominant  mode(s) within the Cancer disorders  category

Benign 1
Conflicting classifications of pathogenicity 3
Likely pathogenic 1
Pathogenic 4
Pathogenic/Likely pathogenic 5
Uncertain significance 4

Variant name Variant type GRCH38 location Germline classification Molecular consequence dbSNP_ID Submitter
NM_000051.4(ATM):c.6305C>T (p.Ala2102Val) Single nucleotide variant Chr11:108317479 Uncertain significance Missense variant|intron variant rs1591790037
NM_000051.4(ATM):c.2341C>T (p.Gln781Ter) Single nucleotide variant Chr11:108257571 Pathogenic/Likely pathogenic Nonsense rs1555075781 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_000051.4(ATM):c.8915A>G (p.Gln2972Arg) Single nucleotide variant Chr11:108365146 Uncertain significance Missense variant|intron variant rs763773991 .Neuberg Centre For Genomic Medicine, NCGM
NM_000051.4(ATM):c.4852C>T (p.Arg1618Ter) Single nucleotide variant Chr11:108295002 Pathogenic Nonsense rs762083530 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
.Neuberg Centre For Genomic Medicine, NCGM
NM_000051.4(ATM):c.478_482del (p.Ser160fs) Deletion Chr11:108235815 - 108235819 Pathogenic/Likely pathogenic Frameshift variant rs587780624 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_000051.4(ATM):c.2250G>A (p.Lys750=) Single nucleotide variant Chr11:108256340 Pathogenic/Likely pathogenic Synonymous variant rs1137887 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_007294.4(BRCA1):c.4484+1G>A Single nucleotide variant Chr17:43076487 Pathogenic Splice donor variant|intron variant rs80358063 .Bioinformatics dept., Datar Cancer Genetics Limited, India
NM_000059.4(BRCA2):c.6952C>G (p.Arg2318Gly) Single nucleotide variant Chr13:32346841 Uncertain significance Missense variant rs80358920 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics
NM_000059.4(BRCA2):c.5683G>A (p.Glu1895Lys) Single nucleotide variant Chr13:32340038 Conflicting classifications of pathogenicity Missense variant rs146351301 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics
NM_032043.3(BRIP1):c.633del (p.Gly212fs) Deletion Chr17:61808752 Pathogenic Frameshift variant rs779466229
NM_032043.3(BRIP1):c.1897A>C (p.Ile633Leu) Single nucleotide variant Chr17:61780299 Conflicting classifications of pathogenicity Missense variant rs765314472 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics
NM_007194.4(CHEK2):c.909-2A>G Single nucleotide variant Chr22:28699939 Likely pathogenic Splice acceptor variant rs1555915589 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_007194.4(CHEK2):c.852C>A (p.Cys284Ter) Single nucleotide variant Chr22:28703561 Pathogenic/Likely pathogenic Nonsense rs1555917031
NM_007194.4(CHEK2):c.58C>T (p.Gln20Ter) Single nucleotide variant Chr22:28734664 Pathogenic/Likely pathogenic Nonsense rs536907995 .Biotechnology, Institute of Science, Nirma University
NM_000603.5(NOS3):c.1250_1259del (p.Ile417fs) Deletion Chr7:151001243 - 151001252 Uncertain significance Frameshift variant rs2486220230 .Biotechnology, Institute of Science, Nirma University
NC_012920.1(MT-CYB):m.15043G>A Single nucleotide variant ChrMT:15043 Benign rs193302985 .Department of Zoology Govt. MVM College
.Genomics Division, Defence Institute of Physiology and Allied Sciences
NM_024675.4(PALB2):c.2762del (p.Gln921fs) Deletion Chr16:23624081 Pathogenic Frameshift variant rs1567214484
NM_003620.4(PPM1D):c.1654C>T (p.Arg552Ter) Single nucleotide variant Chr17:60663388 Conflicting classifications of pathogenicity Nonsense rs779070661 .Biotechnology, Institute of Science, Nirma University

Indian Institutes & Variant Submission Overview
Chromosome-wise Variant Distribution