An
Autosomal dominant
mode(s) within the
Cancer disorders
category
Benign
1
Conflicting classifications of pathogenicity
3
Likely pathogenic
1
Pathogenic
4
Pathogenic/Likely pathogenic
5
Uncertain significance
4
| Variant name | Variant type | GRCH38 location | Germline classification | Molecular consequence | dbSNP_ID | Submitter |
|---|---|---|---|---|---|---|
| NM_000051.4(ATM):c.6305C>T (p.Ala2102Val) | Single nucleotide variant | Chr11:108317479 | Uncertain significance | Missense variant|intron variant | rs1591790037 | |
| NM_000051.4(ATM):c.2341C>T (p.Gln781Ter) | Single nucleotide variant | Chr11:108257571 | Pathogenic/Likely pathogenic | Nonsense | rs1555075781 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India |
| NM_000051.4(ATM):c.8915A>G (p.Gln2972Arg) | Single nucleotide variant | Chr11:108365146 | Uncertain significance | Missense variant|intron variant | rs763773991 |
.Neuberg Centre For Genomic Medicine, NCGM |
| NM_000051.4(ATM):c.4852C>T (p.Arg1618Ter) | Single nucleotide variant | Chr11:108295002 | Pathogenic | Nonsense | rs762083530 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India .Neuberg Centre For Genomic Medicine, NCGM |
| NM_000051.4(ATM):c.478_482del (p.Ser160fs) | Deletion | Chr11:108235815 - 108235819 | Pathogenic/Likely pathogenic | Frameshift variant | rs587780624 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India |
| NM_000051.4(ATM):c.2250G>A (p.Lys750=) | Single nucleotide variant | Chr11:108256340 | Pathogenic/Likely pathogenic | Synonymous variant | rs1137887 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India |
| NM_007294.4(BRCA1):c.4484+1G>A | Single nucleotide variant | Chr17:43076487 | Pathogenic | Splice donor variant|intron variant | rs80358063 |
.Bioinformatics dept., Datar Cancer Genetics Limited, India |
| NM_000059.4(BRCA2):c.6952C>G (p.Arg2318Gly) | Single nucleotide variant | Chr13:32346841 | Uncertain significance | Missense variant | rs80358920 |
.Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics |
| NM_000059.4(BRCA2):c.5683G>A (p.Glu1895Lys) | Single nucleotide variant | Chr13:32340038 | Conflicting classifications of pathogenicity | Missense variant | rs146351301 |
.Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics |
| NM_032043.3(BRIP1):c.633del (p.Gly212fs) | Deletion | Chr17:61808752 | Pathogenic | Frameshift variant | rs779466229 | |
| NM_032043.3(BRIP1):c.1897A>C (p.Ile633Leu) | Single nucleotide variant | Chr17:61780299 | Conflicting classifications of pathogenicity | Missense variant | rs765314472 |
.Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics |
| NM_007194.4(CHEK2):c.909-2A>G | Single nucleotide variant | Chr22:28699939 | Likely pathogenic | Splice acceptor variant | rs1555915589 |
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India |
| NM_007194.4(CHEK2):c.852C>A (p.Cys284Ter) | Single nucleotide variant | Chr22:28703561 | Pathogenic/Likely pathogenic | Nonsense | rs1555917031 | |
| NM_007194.4(CHEK2):c.58C>T (p.Gln20Ter) | Single nucleotide variant | Chr22:28734664 | Pathogenic/Likely pathogenic | Nonsense | rs536907995 |
.Biotechnology, Institute of Science, Nirma University |
| NM_000603.5(NOS3):c.1250_1259del (p.Ile417fs) | Deletion | Chr7:151001243 - 151001252 | Uncertain significance | Frameshift variant | rs2486220230 |
.Biotechnology, Institute of Science, Nirma University |
| NC_012920.1(MT-CYB):m.15043G>A | Single nucleotide variant | ChrMT:15043 | Benign | rs193302985 |
.Department of Zoology Govt. MVM College .Genomics Division, Defence Institute of Physiology and Allied Sciences |
|
| NM_024675.4(PALB2):c.2762del (p.Gln921fs) | Deletion | Chr16:23624081 | Pathogenic | Frameshift variant | rs1567214484 | |
| NM_003620.4(PPM1D):c.1654C>T (p.Arg552Ter) | Single nucleotide variant | Chr17:60663388 | Conflicting classifications of pathogenicity | Nonsense | rs779070661 |
.Biotechnology, Institute of Science, Nirma University |
Indian Institutes & Variant Submission Overview
Chromosome-wise Variant Distribution