GenTIGSA Gene Database on Rare Genetic Disorders

Variants in ClinVar from 582 of 1004 Rare Genetic Disorders of GenTIGS

Developmental and epileptic encephalopathy 6B

An  Autosomal dominant  mode(s) within the Neurodevelopmental disorders  category

Conflicting classifications of pathogenicity 3
Likely pathogenic 3
Pathogenic 6
Pathogenic/Likely pathogenic 3

Variant name Variant type GRCH38 location Germline classification Molecular consequence dbSNP_ID Submitter
NM_001165963.4(SCN1A):c.3793C>A (p.Leu1265Met) Single nucleotide variant Chr2:166012195 Likely pathogenic Missense variant|non-coding transcript variant rs781526618 .Lifecell International Pvt. Ltd
NM_001165963.4(SCN1A):c.3999G>A (p.Met1333Ile) Single nucleotide variant Chr2:166009722 Likely pathogenic Missense variant|non-coding transcript variant rs1559140155 .Lifecell International Pvt. Ltd
NM_001165963.4(SCN1A):c.5299G>T (p.Val1767Phe) Single nucleotide variant Chr2:165991976 Likely pathogenic Missense variant|non-coding transcript variant rs2468334088 .Lifecell International Pvt. Ltd
NM_001165963.4(SCN1A):c.5263G>T (p.Asp1755Tyr) Single nucleotide variant Chr2:165992012 Pathogenic/Likely pathogenic Missense variant|non-coding transcript variant rs927722314 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_001165963.4(SCN1A):c.5501C>T (p.Ala1834Val) Single nucleotide variant Chr2:165991774 Conflicting classifications of pathogenicity Missense variant|non-coding transcript variant rs780809852 .Lifecell International Pvt. Ltd
NM_001165963.4(SCN1A):c.5536_5539del (p.Lys1846fs) Microsatellite Chr2:165991736 - 165991739 Pathogenic Frameshift variant|non-coding transcript variant rs794726726 .Lifecell International Pvt. Ltd
NM_001165963.4(SCN1A):c.4906C>T (p.Arg1636Ter) Single nucleotide variant Chr2:165992369 Pathogenic Nonsense|non-coding transcript variant rs199727342 .Lifecell International Pvt. Ltd
NM_001165963.4(SCN1A):c.1171-1G>A Single nucleotide variant Chr2:166046977 Pathogenic/Likely pathogenic Splice acceptor variant rs2468182873 .Lifecell International Pvt. Ltd
NM_001165963.4(SCN1A):c.2589+2dup Duplication Chr2:166039420 - 166039421 Pathogenic/Likely pathogenic Splice donor variant rs2468112683 .Lifecell International Pvt. Ltd
NM_001165963.4(SCN1A):c.1982C>T (p.Thr661Ile) Single nucleotide variant Chr2:166043730 Conflicting classifications of pathogenicity Missense variant|5 prime UTR variant|non-coding transcript variant|intron variant rs780340848 .Lifecell International Pvt. Ltd
NM_001165963.4(SCN1A):c.2994C>A (p.Asp998Glu) Single nucleotide variant Chr2:166036483 Conflicting classifications of pathogenicity Missense variant|non-coding transcript variant rs796052991 .Lifecell International Pvt. Ltd
.Neuberg Centre For Genomic Medicine, NCGM
NM_001165963.4(SCN1A):c.602+1G>A Single nucleotide variant Chr2:166054637 Pathogenic Splice donor variant rs794726827 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics
.Neuberg Centre For Genomic Medicine, NCGM
NM_001165963.4(SCN1A):c.2589+3A>T Single nucleotide variant Chr2:166039420 Pathogenic Intron variant rs794726775 .Lifecell International Pvt. Ltd
NM_001165963.4(SCN1A):c.677C>T (p.Thr226Met) Single nucleotide variant Chr2:166052869 Pathogenic Missense variant|5 prime UTR variant|non-coding transcript variant rs121917984 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics
.Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_001165963.4(SCN1A):c.302G>A (p.Arg101Gln) Single nucleotide variant Chr2:166058651 Pathogenic Missense variant|5 prime UTR variant|non-coding transcript variant rs121917918 .Lifecell International Pvt. Ltd

Indian Institutes & Variant Submission Overview
Chromosome-wise Variant Distribution