GenTIGSA Gene Database on Rare Genetic Disorders

Variants in ClinVar from 582 of 1004 Rare Genetic Disorders of GenTIGS

Developmental and epileptic encephalopathy, 11

An  Autosomal dominant  mode(s) within the Neurodevelopmental disorders  category

Conflicting classifications of pathogenicity 1
Likely pathogenic 2
Pathogenic 2
Uncertain significance 2

Variant name Variant type GRCH38 location Germline classification Molecular consequence dbSNP_ID Submitter
NM_001040142.2(SCN2A):c.238G>A (p.Asp80Asn) Single nucleotide variant Chr2:165296061 Uncertain significance Missense variant .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_001040142.2(SCN2A):c.1635del (p.Arg545fs) Deletion Chr2:165315721 Likely pathogenic Frameshift variant rs2467909264 .Lifecell International Pvt. Ltd
NM_001040142.2(SCN2A):c.1552G>T (p.Glu518Ter) Single nucleotide variant Chr2:165315639 Pathogenic Nonsense rs1553569732 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics
NM_001040142.2(SCN2A):c.5311T>A (p.Tyr1771Asn) Single nucleotide variant Chr2:165389117 Likely pathogenic Missense variant rs2468158869 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics
NM_001040142.2(SCN2A):c.5726C>T (p.Ala1909Val) Single nucleotide variant Chr2:165389532 Uncertain significance Missense variant rs772819993 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics
NM_001040142.2(SCN2A):c.2765G>A (p.Arg922His) Single nucleotide variant Chr2:165344757 Conflicting classifications of pathogenicity Missense variant rs1057518048 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_001040142.2(SCN2A):c.1154del (p.Phe385fs) Deletion Chr2:165313738 Pathogenic Frameshift variant rs879253767 .Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics

Indian Institutes & Variant Submission Overview
Chromosome-wise Variant Distribution