GenTIGSA Gene Database on Rare Genetic Disorders

Variants in ClinVar from 539 of 916 Rare Genetic Disorders of GenTIGS

CHARGE syndrome

An  Autosomal dominant  mode(s) within the Multisystemic disorders  category

Likely pathogenic 3
Pathogenic 4
Pathogenic/Likely pathogenic 2
Uncertain significance 1

Variant name Variant type GRCH38 location Germline classification Molecular consequence dbSNP_ID Submitter
NM_017780.4(CHD7):c.619C>T (p.Gln207Ter) Single nucleotide variant Chr8:60742051 Pathogenic Nonsense rs2487267049 .Division of Medical Genetics, Department of Pediatrics, All India Institute of Medical Sciences, New Delhi
NM_017780.4(CHD7):c.2333C>G (p.Ala778Gly) Single nucleotide variant Chr8:60800482 Uncertain significance Missense variant|intron variant rs747595218 .Division of Medical Genetics, Department of Pediatrics, All India Institute of Medical Sciences, New Delhi
NM_017780.4(CHD7):c.3757_3778+7del Deletion Chr8:60830554 - 60830582 Likely pathogenic Splice donor variant|intron variant rs2487855072 .Lifecell International Pvt. Ltd
NM_017780.4(CHD7):c.5480del (p.Lys1827fs) Deletion Chr8:60850567 Likely pathogenic Frameshift variant|intron variant rs2488015610 .Lifecell International Pvt. Ltd
NM_017780.4(CHD7):c.7803C>G (p.Tyr2601Ter) Single nucleotide variant Chr8:60861098 Pathogenic/Likely pathogenic Nonsense|intron variant rs1563669432 .Lifecell International Pvt. Ltd
NM_017780.4(CHD7):c.5504_5508delinsT (p.Gly1835fs) Indel Chr8:60850592 - 60850596 Likely pathogenic Frameshift variant|intron variant rs1586440620 .Diagnostics Services (NGS), CSIR - Centre For Cellular And Molecular Biology
NM_017780.4(CHD7):c.3106C>T (p.Arg1036Ter) Single nucleotide variant Chr8:60822651 Pathogenic Nonsense|intron variant rs1554597716 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_017780.4(CHD7):c.1735C>T (p.Gln579Ter) Single nucleotide variant Chr8:60781069 Pathogenic/Likely pathogenic Nonsense|intron variant rs780953224 .Lifecell International Pvt. Ltd
NM_017780.4(CHD7):c.5833C>T (p.Arg1945Ter) Single nucleotide variant Chr8:60852186 Pathogenic Nonsense|intron variant rs757160222 .Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
NM_017780.4(CHD7):c.2959C>T (p.Arg987Ter) Single nucleotide variant Chr8:60822504 Pathogenic Nonsense|intron variant rs886040983 .Lifecell International Pvt. Ltd

Indian Institutes & Variant Submission Overview
Chromosome-wise Variant Distribution