Total 464 pathogenic variants reported for Primary hyperoxaluria, type I
Variant Name |
Variant Type |
Variant Genomic Location |
Clinical Significance |
Phenotype Condition |
Review Status |
ClinGen Allele |
dbSNP ID |
Variation/condition record |
NM_012203.2(GRHPR):c.295C>T (p.Arg99Ter)
|
SNV Germline |
Chr9:37426545 |
Pathogenic |
Primary hyperoxaluria, type II Condition: not provided Primary hyperoxaluria |
Criteria Provided Multiple Submitters No Conflicts |
CA253540 |
rs_119490108 |
10 SubmittersRCV000005991RCV000579200RCV000590094 |
NM_000030.3(AGXT):c.613T>C (p.Ser205Pro)
|
SNV Germline |
Chr2:240873995 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
CA340441 |
rs_121908520 |
8 SubmittersRCV000005994RCV000420710 |
NM_000030.3(AGXT):c.198C>G (p.Tyr66Ter)
|
SNV Germline |
Chr2:240869202 |
Pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Single Submitter |
CA253542 |
rs_121908521 |
3 SubmittersRCV000005996RCV003555932 |
NM_000030.3(AGXT):c.245G>A (p.Gly82Glu)
|
SNV Germline |
Chr2:240869249 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type I Condition: not provided Primary hyperoxaluria |
Criteria Provided Multiple Submitters No Conflicts |
CA340442 |
rs_121908522 |
9 SubmittersRCV000005997RCV001851685RCV003234894 |
NM_000030.3(AGXT):c.121G>A (p.Gly41Arg)
|
SNV Germline |
Chr2:240868986 |
Pathogenic |
Primary hyperoxaluria, type I Nephrolithiasis Nephrocalcinosis Condition: not provided Primary hyperoxaluria |
Criteria Provided Multiple Submitters No Conflicts |
CA340443 |
rs_121908523 |
12 SubmittersRCV000005998RCV000662315RCV001221086RCV002509145 |
NM_000030.3(AGXT):c.454T>A (p.Phe152Ile)
|
SNV Germline |
Chr2:240871379 |
Pathogenic |
Primary hyperoxaluria, type I Condition: not provided Primary hyperoxaluria |
Criteria Provided Multiple Submitters No Conflicts |
CA340444 |
rs_121908524 |
11 SubmittersRCV000005999RCV000727639RCV000779687 |
NM_000030.3(AGXT):c.731T>C (p.Ile244Thr)
|
SNV Germline |
Chr2:240875159 |
Pathogenic |
Primary hyperoxaluria, type I Primary hyperoxaluria Nephrolithiasis Nephrocalcinosis Condition: not provided AGXT-related disorder |
Criteria Provided Multiple Submitters No Conflicts |
CA340445 |
rs_121908525 |
15 SubmittersRCV000006000RCV000586265RCV000662316RCV001042614RCV003407286 |
NM_000030.3(AGXT):c.697C>T (p.Arg233Cys)
|
SNV Germline |
Chr2:240875125 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
CA340446 |
rs_121908526 |
9 SubmittersRCV000006001RCV001070457 |
NM_000030.3(AGXT):c.698G>A (p.Arg233His)
|
SNV Germline |
Chr2:240875126 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
CA253545 |
rs_121908527 |
6 SubmittersRCV000006002RCV001385647 |
NM_000030.3(AGXT):c.738G>A (p.Trp246Ter)
|
SNV Germline |
Chr2:240875166 |
Pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Single Submitter |
CA340447 |
rs_121908528 |
4 SubmittersRCV000006003RCV003555933 |
NM_000030.3(AGXT):c.466G>A (p.Gly156Arg)
|
SNV Germline |
Chr2:240871391 |
Pathogenic |
Primary hyperoxaluria, type I Condition: not provided Primary hyperoxaluria |
Criteria Provided Multiple Submitters No Conflicts |
CA340448 |
rs_121908530 |
8 SubmittersRCV000006004RCV001851686RCV002265548 |
NM_000030.3(AGXT):c.508G>A (p.Gly170Arg)
|
SNV Germline |
Chr2:240871433 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type I Condition: not provided Primary hyperoxaluria AGXT-related disorder |
Criteria Provided Multiple Submitters No Conflicts |
CA343785 |
rs_121908529 |
21 SubmittersRCV000032681RCV000432954RCV000589490RCV003407388 |
NM_021939.4(FKBP10):c.337G>A (p.Glu113Lys)
|
SNV Germline |
Chr17:41817149 |
Pathogenic/Likely pathogenic |
Bruck syndrome 1 Osteogenesis imperfecta type 11 Condition: not provided Congenital adrenal hyperplasia Primary hyperoxaluria, type II Osteogenesis imperfecta |
Criteria Provided Multiple Submitters No Conflicts |
CA130860 |
rs_397514674 |
4 SubmittersRCV000034360RCV003137556RCV003556108RCV004525862RCV004541065RCV004579534 |
NM_000030.3(AGXT):c.560C>T (p.Ser187Phe)
|
SNV Germline |
Chr2:240873014 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type I Primary hyperoxaluria |
Criteria Provided Multiple Submitters No Conflicts |
CA345702 |
rs_180177238 |
5 SubmittersRCV000128801RCV003317095 |
NM_012203.2(GRHPR):c.904C>T (p.Arg302Cys)
|
SNV Germline |
Chr9:37436699 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type II Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
CA273040 |
rs_180177322 |
8 SubmittersRCV000149443RCV000794534 |
NM_000030.3(AGXT):c.106C>T (p.Arg36Cys)
|
SNV Germline |
Chr2:240868971 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
CA274183 |
rs_180177157 |
5 SubmittersRCV000169332RCV001054309 |
NM_000030.3(AGXT):c.122G>T (p.Gly41Val)
|
SNV Germline |
Chr2:240868987 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
CA274216 |
rs_180177168 |
4 SubmittersRCV000169364RCV001386862 |
NM_000030.3(AGXT):c.302T>C (p.Leu101Pro)
|
SNV Germline |
Chr2:240869306 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
CA274058 |
rs_180177195 |
8 SubmittersRCV000169219RCV001850392 |
NM_000030.3(AGXT):c.322T>C (p.Trp108Arg)
|
SNV Germline |
Chr2:240869326 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
CA274089 |
rs_180177197 |
6 SubmittersRCV000169249RCV000812967 |
NM_000030.3(AGXT):c.346G>A (p.Gly116Arg)
|
SNV Germline |
Chr2:240869350 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type I Condition: not provided Abnormality of metabolism/homeostasis |
Criteria Provided Multiple Submitters No Conflicts |
CA274270 |
rs_180177207 |
7 SubmittersRCV000169408RCV001236818RCV001814082 |
NM_000030.3(AGXT):c.481G>T (p.Gly161Cys)
|
SNV Germline |
Chr2:240871406 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
CA273897 |
rs_180177227 |
5 SubmittersRCV000169046RCV001066143 |
NM_000030.3(AGXT):c.568G>A (p.Gly190Arg)
|
SNV Germline |
Chr2:240873022 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
CA274318 |
rs_180177239 |
8 SubmittersRCV000169439RCV000816747 |
NM_000030.3(AGXT):c.653C>T (p.Ser218Leu)
|
SNV Germline |
Chr2:240874035 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
CA274210 |
rs_180177253 |
6 SubmittersRCV000169358RCV001386996 |
NM_000030.3(AGXT):c.737G>A (p.Trp246Ter)
|
SNV Germline |
Chr2:240875165 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
CA274296 |
rs_180177259 |
4 SubmittersRCV000169425RCV003556212 |
NM_000030.3(AGXT):c.752G>A (p.Trp251Ter)
|
SNV Unknown |
Chr2:240875180 |
Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
CA274094 |
rs_786204545 |
1 SubmittersRCV000169258 |
NM_000030.3(AGXT):c.777-1G>C
|
SNV Germline |
Chr2:240875934 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type I Condition: not provided Primary hyperoxaluria |
Criteria Provided Multiple Submitters No Conflicts |
CA273941 |
rs_180177267 |
7 SubmittersRCV000169101RCV001054661RCV001194150 |
NM_000030.3(AGXT):c.1049G>A (p.Gly350Asp)
|
SNV Germline |
Chr2:240878128 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type I Condition: not provided Primary hyperoxaluria |
Criteria Provided Multiple Submitters No Conflicts |
CA274217 |
rs_180177156 |
7 SubmittersRCV000169365RCV001067841RCV001328117 |
NM_012203.2(GRHPR):c.337G>A (p.Glu113Lys)
|
SNV Germline |
Chr9:37426587 |
Likely pathogenic |
Primary hyperoxaluria, type II Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
CA273930 |
rs_180177307 |
5 SubmittersRCV000169087RCV002517625 |
NM_000030.3(AGXT):c.836T>C (p.Ile279Thr)
|
SNV Germline |
Chr2:240875994 |
Conflicting classifications of pathogenicity |
not specified Primary hyperoxaluria, type I Condition: not provided AGXT-related disorder |
Criteria Provided Conflicting Classifications |
CA203554 |
rs_140992177 |
10 SubmittersRCV000180093RCV000186256RCV000966394RCV003937630 |
NM_000030.3(AGXT):c.866G>A (p.Arg289His)
|
SNV Germline |
Chr2:240877556 |
Conflicting classifications of pathogenicity |
Primary hyperoxaluria, type I Condition: not provided not specified |
Criteria Provided Conflicting Classifications |
CA247930 |
rs_61729604 |
6 SubmittersRCV000186341RCV000587981RCV002265666 |
NM_000030.3(AGXT):c.2T>C (p.Met1Thr)
|
SNV Germline |
Chr2:240868867 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
CA275613 |
rs_138584408 |
6 SubmittersRCV000186271RCV001061218 |
NM_000030.3(AGXT):c.3G>T (p.Met1Ile)
|
SNV Germline |
Chr2:240868868 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275615 |
rs_180177213 |
1 SubmittersRCV000186272 |
NM_000030.3(AGXT):c.28C>T (p.Pro10Ser)
|
SNV Germline |
Chr2:240868893 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275619 |
rs_180177191 |
1 SubmittersRCV000186274 |
NM_000030.3(AGXT):c.32C>A (p.Pro11His)
|
SNV Germline |
Chr2:240868897 |
Conflicting classifications of pathogenicity |
Primary hyperoxaluria, type I Condition: not provided AGXT-related disorder |
Criteria Provided Conflicting Classifications |
CA275544 |
rs_34116584 |
4 SubmittersRCV000186220RCV000884267RCV003416113 |
NM_000030.3(AGXT):c.32C>G (p.Pro11Arg)
|
SNV Germline |
Chr2:240868897 |
Conflicting classifications of pathogenicity |
Primary hyperoxaluria, type I Primary hyperoxaluria Condition: not provided |
Criteria Provided Conflicting Classifications |
CA275621 |
rs_34116584 |
13 SubmittersRCV000186275RCV001553704RCV001857587 |
NM_000030.3(AGXT):c.35A>G (p.Lys12Arg)
|
SNV Germline |
Chr2:240868900 |
Conflicting classifications of pathogenicity |
Primary hyperoxaluria, type I Condition: not provided Inborn genetic diseases |
Criteria Provided Conflicting Classifications |
CA275546 |
rs_142969817 |
5 SubmittersRCV000186221RCV000881725RCV002516973 |
NM_000030.3(AGXT):c.74T>G (p.Leu25Arg)
|
SNV Germline |
Chr2:240868939 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275623 |
rs_180177262 |
1 SubmittersRCV000186276 |
NM_000030.3(AGXT):c.77T>C (p.Leu26Pro)
|
SNV Germline |
Chr2:240868942 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275625 |
rs_180177268 |
1 SubmittersRCV000186277 |
NM_000030.3(AGXT):c.107G>A (p.Arg36His)
|
SNV Germline |
Chr2:240868972 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
CA275627 |
rs_180177162 |
8 SubmittersRCV000186278RCV001383728 |
NM_000030.3(AGXT):c.122G>A (p.Gly41Glu)
|
SNV Germline |
Chr2:240868987 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275629 |
rs_180177168 |
1 SubmittersRCV000186279 |
NM_000030.3(AGXT):c.125G>A (p.Gly42Glu)
|
SNV Germline |
Chr2:240868990 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275631 |
rs_180177170 |
1 SubmittersRCV000186280 |
NM_000030.3(AGXT):c.130C>T (p.Gln44Ter)
|
SNV Germline |
Chr2:240868995 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Multiple Submitters No Conflicts |
CA275633 |
rs_180177172 |
3 SubmittersRCV000186281 |
NM_000030.3(AGXT):c.139G>A (p.Gly47Arg)
|
SNV Germline |
Chr2:240869004 |
Pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
CA275636 |
rs_180177173 |
3 SubmittersRCV000186282RCV001067805 |
NM_000030.3(AGXT):c.166-1G>A
|
SNV Germline |
Chr2:240869169 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275803 |
rs_180177177 |
1 SubmittersRCV000186370 |
NM_000030.3(AGXT):c.167T>A (p.Ile56Asn)
|
SNV Germline |
Chr2:240869171 |
Conflicting classifications of pathogenicity |
Primary hyperoxaluria, type I Primary hyperoxaluria Condition: not provided |
Criteria Provided Conflicting Classifications |
CA275638 |
rs_180177180 |
5 SubmittersRCV000186283RCV003230441RCV003229816 |
NM_000030.3(AGXT):c.175G>A (p.Glu59Lys)
|
SNV Germline |
Chr2:240869179 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275640 |
rs_767586362 |
1 SubmittersRCV000186284 |
NM_000030.3(AGXT):c.187G>C (p.Gly63Arg)
|
SNV Germline |
Chr2:240869191 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275642 |
rs_180177181 |
1 SubmittersRCV000186285 |
NM_000030.3(AGXT):c.205C>T (p.Gln69Ter)
|
SNV Germline |
Chr2:240869209 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275644 |
rs_180177182 |
1 SubmittersRCV000186286 |
NM_000030.3(AGXT):c.209C>A (p.Thr70Asn)
|
SNV Germline |
Chr2:240869213 |
Likely pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Single Submitter |
CA275647 |
rs_796052058 |
2 SubmittersRCV000186287RCV001857588 |
NM_000030.3(AGXT):c.242C>A (p.Ser81Ter)
|
SNV Germline |
Chr2:240869246 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275649 |
rs_180177184 |
1 SubmittersRCV000186288 |
NM_000030.3(AGXT):c.242C>T (p.Ser81Leu)
|
SNV Germline |
Chr2:240869246 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type I Condition: not provided Primary hyperoxaluria |
Criteria Provided Multiple Submitters No Conflicts |
CA275652 |
rs_180177184 |
6 SubmittersRCV000186289RCV001386863RCV002271450 |
NM_000030.3(AGXT):c.244G>C (p.Gly82Arg)
|
SNV Germline |
Chr2:240869248 |
Pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
CA275654 |
rs_180177185 |
3 SubmittersRCV000186290RCV001852424 |
NM_000030.3(AGXT):c.248A>G (p.His83Arg)
|
SNV Germline |
Chr2:240869252 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275655 |
rs_180177186 |
1 SubmittersRCV000186291 |
NM_000030.3(AGXT):c.254C>A (p.Ala85Asp)
|
SNV Germline |
Chr2:240869258 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275657 |
rs_796052059 |
1 SubmittersRCV000186292 |
NM_000030.3(AGXT):c.283G>A (p.Glu95Lys)
|
SNV Germline |
Chr2:240869287 |
Pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Single Submitter |
CA275659 |
rs_180177189 |
2 SubmittersRCV000186293RCV001352204 |
NM_000030.3(AGXT):c.323G>A (p.Trp108Ter)
|
SNV Germline |
Chr2:240869327 |
Pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Single Submitter |
CA275661 |
rs_180177198 |
2 SubmittersRCV000186294RCV001384602 |
NM_000030.3(AGXT):c.324G>T (p.Trp108Cys)
|
SNV Germline |
Chr2:240869328 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275664 |
rs_796052060 |
1 SubmittersRCV000186295 |
NM_000030.3(AGXT):c.326G>T (p.Gly109Val)
|
SNV Germline |
Chr2:240869330 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275666 |
rs_180177199 |
1 SubmittersRCV000186296 |
NM_000030.3(AGXT):c.331C>T (p.Arg111Ter)
|
SNV Germline |
Chr2:240869335 |
Pathogenic |
Primary hyperoxaluria, type I Condition: not provided Primary hyperoxaluria |
Criteria Provided Multiple Submitters No Conflicts |
CA275668 |
rs_180177202 |
5 SubmittersRCV000186297RCV001384603RCV003330550 |
NM_000030.3(AGXT):c.332G>A (p.Arg111Gln)
|
SNV Germline |
Chr2:240869336 |
Likely pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
CA275671 |
rs_180177203 |
6 SubmittersRCV000186298RCV002305454 |
NM_000030.3(AGXT):c.335C>A (p.Ala112Asp)
|
SNV Germline |
Chr2:240869339 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
CA275673 |
rs_796052061 |
3 SubmittersRCV000186299RCV003556222 |
NM_000030.3(AGXT):c.349G>T (p.Glu117Ter)
|
SNV Germline |
Chr2:240869353 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275674 |
rs_180177208 |
1 SubmittersRCV000186300 |
NM_000030.3(AGXT):c.352C>T (p.Arg118Cys)
|
SNV Germline |
Chr2:240869356 |
Conflicting classifications of pathogenicity |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Conflicting Classifications |
CA275677 |
rs_376844297 |
4 SubmittersRCV000186301RCV000346525 |
NM_000030.3(AGXT):c.353G>A (p.Arg118His)
|
SNV Germline |
Chr2:240869357 |
Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
CA275679 |
rs_138025751 |
2 SubmittersRCV000186302 |
NM_000030.3(AGXT):c.358+1G>T
|
SNV Germline |
Chr2:240869363 |
Pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Single Submitter |
CA275791 |
rs_796052067 |
2 SubmittersRCV000186358RCV003688832 |
NM_000030.3(AGXT):c.358+2T>G
|
SNV Germline |
Chr2:240869364 |
Pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Single Submitter |
CA275792 |
rs_113681235 |
2 SubmittersRCV000186359RCV001384604 |
NM_000030.3(AGXT):c.364C>T (p.Arg122Ter)
|
SNV Germline |
Chr2:240870649 |
Pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
CA275681 |
rs_180177210 |
7 SubmittersRCV000186303RCV000818752 |
NM_000030.3(AGXT):c.371A>C (p.His124Pro)
|
SNV Germline |
Chr2:240870656 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275684 |
rs_180177211 |
1 SubmittersRCV000186304 |
NM_000030.3(AGXT):c.409C>T (p.Gln137Ter)
|
SNV Germline |
Chr2:240870694 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275686 |
rs_180177214 |
1 SubmittersRCV000186305 |
NM_000030.3(AGXT):c.423G>T (p.Glu141Asp)
|
SNV Germline |
Chr2:240870708 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275689 |
rs_180177217 |
1 SubmittersRCV000186306 |
NM_000030.3(AGXT):c.424-2A>G
|
SNV Germline |
Chr2:240871347 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275804 |
rs_180177219 |
1 SubmittersRCV000186371 |
NM_000030.3(AGXT):c.449T>C (p.Leu150Pro)
|
SNV Germline |
Chr2:240871374 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275691 |
rs_180177222 |
1 SubmittersRCV000186307 |
NM_000030.3(AGXT):c.457T>G (p.Leu153Val)
|
SNV Germline |
Chr2:240871382 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275693 |
rs_180177223 |
1 SubmittersRCV000186308 |
NM_000030.3(AGXT):c.473C>A (p.Ser158Ter)
|
SNV Germline |
Chr2:240871398 |
Pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Single Submitter |
CA275695 |
rs_180177225 |
2 SubmittersRCV000186310RCV003556223 |
NM_000030.3(AGXT):c.473C>T (p.Ser158Leu)
|
SNV Germline |
Chr2:240871398 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
CA275694 |
rs_180177225 |
7 SubmittersRCV000186309RCV001233993 |
NM_000030.3(AGXT):c.481G>A (p.Gly161Ser)
|
SNV Germline |
Chr2:240871406 |
Pathogenic |
Primary hyperoxaluria, type I Nephrolithiasis Nephrocalcinosis Condition: not provided Primary hyperoxaluria |
Criteria Provided Multiple Submitters No Conflicts |
CA275698 |
rs_180177227 |
6 SubmittersRCV000186311RCV000662317RCV001069631RCV003226241 |
NM_000030.3(AGXT):c.481G>C (p.Gly161Arg)
|
SNV Germline |
Chr2:240871406 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275700 |
rs_180177227 |
1 SubmittersRCV000186312 |
NM_000030.3(AGXT):c.489G>A (p.Leu163=)
|
SNV Germline |
Chr2:240871414 |
Conflicting classifications of pathogenicity |
Primary hyperoxaluria, type I not specified Primary hyperoxaluria Condition: not provided |
Criteria Provided Conflicting Classifications |
CA275577 |
rs_147601535 |
6 SubmittersRCV000186244RCV000251696RCV000357381RCV000974765 |
NM_000030.3(AGXT):c.497T>C (p.Leu166Pro)
|
SNV Germline |
Chr2:240871422 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275701 |
rs_180177230 |
1 SubmittersRCV000186313 |
NM_000030.3(AGXT):c.518G>A (p.Cys173Tyr)
|
SNV Germline |
Chr2:240871443 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275703 |
rs_180177231 |
1 SubmittersRCV000186314 |
NM_000030.3(AGXT):c.519C>A (p.Cys173Ter)
|
SNV Germline |
Chr2:240871444 |
Pathogenic |
Primary hyperoxaluria, type I Primary hyperoxaluria |
Criteria Provided Single Submitter |
CA275704 |
rs_180177232 |
2 SubmittersRCV000186315RCV001192775 |
NM_000030.3(AGXT):c.525-1G>A
|
SNV Germline |
Chr2:240872978 |
Pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
CA275805 |
rs_180177234 |
3 SubmittersRCV000186372RCV001852427 |
NM_000030.3(AGXT):c.533G>A (p.Cys178Tyr)
|
SNV Germline |
Chr2:240872987 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
CA275707 |
rs_180177235 |
4 SubmittersRCV000186316RCV002513968 |
NM_000030.3(AGXT):c.547G>A (p.Asp183Asn)
|
SNV Germline |
Chr2:240873001 |
Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
CA275709 |
rs_180177236 |
2 SubmittersRCV000186317 |
NM_000030.3(AGXT):c.583A>C (p.Met195Leu)
|
SNV Germline |
Chr2:240873037 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275710 |
rs_180177243 |
1 SubmittersRCV000186318 |
NM_000030.3(AGXT):c.584T>G (p.Met195Arg)
|
SNV Germline |
Chr2:240873038 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
CA275712 |
rs_180177244 |
6 SubmittersRCV000186319RCV001036463 |
NM_000030.3(AGXT):c.595G>A (p.Gly199Ser)
|
SNV Germline |
Chr2:240873049 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275713 |
rs_796052062 |
1 SubmittersRCV000186320 |
NM_000030.3(AGXT):c.596-2A>G
|
SNV Germline |
Chr2:240873976 |
Pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
CA275806 |
rs_180177245 |
2 SubmittersRCV000186373 |
NM_000030.3(AGXT):c.603C>A (p.Asp201Glu)
|
SNV Germline |
Chr2:240873985 |
Pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
CA275715 |
rs_180177246 |
5 SubmittersRCV000186321RCV001222818 |
NM_000030.3(AGXT):c.605T>A (p.Ile202Asn)
|
SNV Germline |
Chr2:240873987 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275716 |
rs_536352238 |
1 SubmittersRCV000186322 |
NM_000030.3(AGXT):c.612C>A (p.Tyr204Ter)
|
SNV Germline |
Chr2:240873994 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275718 |
rs_180177247 |
1 SubmittersRCV000186323 |
NM_000030.3(AGXT):c.614C>A (p.Ser205Ter)
|
SNV Germline |
Chr2:240873996 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275723 |
rs_180177248 |
1 SubmittersRCV000186325 |
NM_000030.3(AGXT):c.614C>T (p.Ser205Leu)
|
SNV Germline |
Chr2:240873996 |
Pathogenic |
Primary hyperoxaluria, type I Condition: not provided Primary hyperoxaluria |
Criteria Provided Multiple Submitters No Conflicts |
CA275721 |
rs_180177248 |
4 SubmittersRCV000186324RCV001857589RCV002307437 |
NM_000030.3(AGXT):c.628G>C (p.Ala210Pro)
|
SNV Germline |
Chr2:240874010 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275726 |
rs_180177250 |
1 SubmittersRCV000186326 |
NM_000030.3(AGXT):c.646G>A (p.Gly216Arg)
|
SNV Germline |
Chr2:240874028 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
CA275728 |
rs_180177252 |
3 SubmittersRCV000186327RCV003556224 |
NM_000030.3(AGXT):c.661T>C (p.Ser221Pro)
|
SNV Germline |
Chr2:240874043 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275730 |
rs_180177254 |
1 SubmittersRCV000186328 |
NM_000030.3(AGXT):c.680+1G>A
|
SNV Germline |
Chr2:240874063 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type I Condition: not provided Primary hyperoxaluria |
Criteria Provided Multiple Submitters No Conflicts |
CA275794 |
rs_111996685 |
3 SubmittersRCV000186361RCV003556226RCV003330551 |
NM_000030.3(AGXT):c.680+1G>C
|
SNV Germline |
Chr2:240874063 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275793 |
rs_111996685 |
1 SubmittersRCV000186360 |
NM_000030.3(AGXT):c.680+2T>A
|
SNV Germline |
Chr2:240874064 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275795 |
rs_111742810 |
1 SubmittersRCV000186362 |
NM_000030.3(AGXT):c.680+5G>C
|
SNV Germline |
Chr2:240874067 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275796 |
rs_180177256 |
1 SubmittersRCV000186363 |
NM_000030.3(AGXT):c.698G>T (p.Arg233Leu)
|
SNV Germline |
Chr2:240875126 |
Likely pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Single Submitter |
CA275732 |
rs_121908527 |
2 SubmittersRCV000186329RCV001857590 |
NM_000030.3(AGXT):c.727G>C (p.Asp243His)
|
SNV Germline |
Chr2:240875155 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275733 |
rs_180177258 |
1 SubmittersRCV000186330 |
NM_000030.3(AGXT):c.742G>T (p.Ala248Ser)
|
SNV Germline |
Chr2:240875170 |
Conflicting classifications of pathogenicity |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Conflicting Classifications |
CA275588 |
rs_180177260 |
3 SubmittersRCV000186253RCV002517831 |
NM_000030.3(AGXT):c.753G>A (p.Trp251Ter)
|
SNV Germline |
Chr2:240875181 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275734 |
rs_180177263 |
1 SubmittersRCV000186331 |
NM_000030.3(AGXT):c.757T>C (p.Cys253Arg)
|
SNV Germline |
Chr2:240875185 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
CA275736 |
rs_180177264 |
3 SubmittersRCV000186332RCV001236934 |
NM_000030.3(AGXT):c.776+1G>A
|
SNV Germline |
Chr2:240875205 |
Pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Single Submitter |
CA275797 |
rs_180177265 |
2 SubmittersRCV000186364RCV002513969 |
NM_000030.3(AGXT):c.776+1G>C
|
SNV Germline |
Chr2:240875205 |
Pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Single Submitter |
CA275798 |
rs_180177265 |
2 SubmittersRCV000186365RCV003556227 |
NM_000030.3(AGXT):c.777-2A>G
|
SNV Germline |
Chr2:240875933 |
Likely pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Single Submitter |
CA275807 |
rs_796052068 |
2 SubmittersRCV000186374RCV002223813 |
NM_000030.3(AGXT):c.783T>A (p.His261Gln)
|
SNV Germline |
Chr2:240875941 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275737 |
rs_180177269 |
1 SubmittersRCV000186333 |
NM_000030.3(AGXT):c.806T>C (p.Leu269Pro)
|
SNV Germline |
Chr2:240875964 |
Conflicting classifications of pathogenicity |
Primary hyperoxaluria, type I Condition: not provided not specified |
Criteria Provided Conflicting Classifications |
CA275739 |
rs_180177271 |
3 SubmittersRCV000186334RCV001852425RCV002282021 |
NM_000030.3(AGXT):c.822G>C (p.Glu274Asp)
|
SNV Germline |
Chr2:240875980 |
Conflicting classifications of pathogenicity |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Conflicting Classifications |
CA275741 |
rs_146525143 |
6 SubmittersRCV000186335RCV001852426 |
NM_000030.3(AGXT):c.823A>C (p.Ser275Arg)
|
SNV Germline |
Chr2:240875981 |
Likely pathogenic |
Primary hyperoxaluria, type I Cardiac arrhythmia Primary hyperoxaluria |
Criteria Provided Single Submitter |
CA275743 |
rs_180177272 |
2 SubmittersRCV000186336RCV004539733RCV004525892 |
NM_000030.3(AGXT):c.844C>T (p.Gln282Ter)
|
SNV Germline |
Chr2:240876002 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275745 |
rs_180177279 |
1 SubmittersRCV000186337 |
NM_000030.3(AGXT):c.846G>C (p.Gln282His)
|
SNV Germline |
Chr2:240876004 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275748 |
rs_180177284 |
1 SubmittersRCV000186338 |
NM_000030.3(AGXT):c.846+1G>A
|
SNV Germline |
Chr2:240876005 |
Pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
CA275800 |
rs_180177281 |
2 SubmittersRCV000186367 |
NM_000030.3(AGXT):c.846+1G>T
|
SNV Germline |
Chr2:240876005 |
Pathogenic |
Primary hyperoxaluria, type I Condition: not provided Primary hyperoxaluria |
Criteria Provided Multiple Submitters No Conflicts |
CA275799 |
rs_180177281 |
5 SubmittersRCV000186366RCV000806714RCV002307438 |
NM_000030.3(AGXT):c.847-3C>G
|
SNV Germline |
Chr2:240877534 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
CA275809 |
rs_180177286 |
9 SubmittersRCV000186376RCV000803735 |
NM_000030.3(AGXT):c.847-1G>C
|
SNV Germline |
Chr2:240877536 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type I Primary hyperoxaluria |
Criteria Provided Multiple Submitters No Conflicts |
CA275808 |
rs_180177285 |
4 SubmittersRCV000186375RCV001269136 |
NM_000030.3(AGXT):c.851T>C (p.Leu284Pro)
|
SNV Germline |
Chr2:240877541 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275750 |
rs_180177287 |
1 SubmittersRCV000186339 |
NM_000030.3(AGXT):c.853G>T (p.Glu285Ter)
|
SNV Germline |
Chr2:240877543 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275752 |
rs_180177288 |
1 SubmittersRCV000186340 |
NM_000030.3(AGXT):c.883G>A (p.Ala295Thr)
|
SNV Germline |
Chr2:240877573 |
Conflicting classifications of pathogenicity |
Primary hyperoxaluria, type I Condition: not provided not specified |
Criteria Provided Conflicting Classifications |
CA275599 |
rs_13408961 |
9 SubmittersRCV000186262RCV000428366RCV001844077 |
NM_000030.3(AGXT):c.891T>G (p.Tyr297Ter)
|
SNV Germline |
Chr2:240877581 |
Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
CA275755 |
rs_180177292 |
2 SubmittersRCV000186342 |
NM_000030.3(AGXT):c.893T>C (p.Leu298Pro)
|
SNV Germline |
Chr2:240877583 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275758 |
rs_180177293 |
1 SubmittersRCV000186343 |
NM_000030.3(AGXT):c.907C>T (p.Gln303Ter)
|
SNV Germline |
Chr2:240877597 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
CA275759 |
rs_180177294 |
3 SubmittersRCV000186344RCV002516974 |
NM_000030.3(AGXT):c.922C>T (p.Gln308Ter)
|
SNV Germline |
Chr2:240877612 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275762 |
rs_180177296 |
1 SubmittersRCV000186345 |
NM_000030.3(AGXT):c.942+1G>T
|
SNV Germline |
Chr2:240877633 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
CA275801 |
rs_180177297 |
3 SubmittersRCV000186368RCV001857593 |
NM_000030.3(AGXT):c.943-1G>A
|
SNV Germline |
Chr2:240878021 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275811 |
rs_180177298 |
1 SubmittersRCV000186378 |
NM_000030.3(AGXT):c.943-1G>T
|
SNV Germline |
Chr2:240878021 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
CA275810 |
rs_180177298 |
4 SubmittersRCV000186377RCV003556228 |
NM_000030.3(AGXT):c.947T>C (p.Leu316Pro)
|
SNV Germline |
Chr2:240878026 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275765 |
rs_796052063 |
1 SubmittersRCV000186346 |
NM_000030.3(AGXT):c.956C>T (p.Pro319Leu)
|
SNV Germline |
Chr2:240878035 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275767 |
rs_180177299 |
1 SubmittersRCV000186347 |
NM_000030.3(AGXT):c.996G>A (p.Trp332Ter)
|
SNV Germline |
Chr2:240878075 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
CA275769 |
rs_796052064 |
3 SubmittersRCV000186348RCV001857591 |
NM_000030.3(AGXT):c.997A>T (p.Arg333Ter)
|
SNV Germline |
Chr2:240878076 |
Pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
CA275772 |
rs_180177303 |
4 SubmittersRCV000186349RCV001382062 |
NM_000030.3(AGXT):c.1007T>A (p.Val336Asp)
|
SNV Germline |
Chr2:240878086 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
CA275775 |
rs_180177155 |
4 SubmittersRCV000186350RCV003556225 |
NM_000030.3(AGXT):c.1014C>G (p.Tyr338Ter)
|
SNV Germline |
Chr2:240878093 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275776 |
rs_756437332 |
1 SubmittersRCV000186351 |
NM_000030.3(AGXT):c.1045G>A (p.Gly349Ser)
|
SNV Germline |
Chr2:240878124 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275779 |
rs_796052065 |
1 SubmittersRCV000186352 |
NM_000030.3(AGXT):c.1071+1G>A
|
SNV Germline |
Chr2:240878151 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275802 |
rs_180177158 |
1 SubmittersRCV000186369 |
NM_000030.3(AGXT):c.1076T>C (p.Leu359Pro)
|
SNV Germline |
Chr2:240878718 |
Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
CA275781 |
rs_180177160 |
2 SubmittersRCV000186353 |
NM_000030.3(AGXT):c.1079G>A (p.Arg360Gln)
|
SNV Germline |
Chr2:240878721 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
CA275783 |
rs_180177161 |
5 SubmittersRCV000186354RCV001857592 |
NM_000030.3(AGXT):c.1102G>A (p.Ala368Thr)
|
SNV Germline |
Chr2:240878744 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275785 |
rs_180177163 |
1 SubmittersRCV000186355 |
NM_000030.3(AGXT):c.1142G>A (p.Arg381Lys)
|
SNV Germline |
Chr2:240878784 |
Conflicting classifications of pathogenicity |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Conflicting Classifications |
CA275605 |
rs_151185188 |
4 SubmittersRCV000186266RCV001753585 |
NM_000030.3(AGXT):c.1148C>A (p.Ala383Asp)
|
SNV Germline |
Chr2:240878790 |
Pathogenic |
Primary hyperoxaluria, type I |
No Assertion Criteria Provided |
CA275787 |
rs_796052066 |
1 SubmittersRCV000186356 |
NM_000030.3(AGXT):c.1151T>C (p.Leu384Pro)
|
SNV Germline |
Chr2:240878793 |
Conflicting classifications of pathogenicity |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Conflicting Classifications |
CA275789 |
rs_180177165 |
3 SubmittersRCV000186357RCV002516975 |
NM_012203.2(GRHPR):c.84-2A>G
|
SNV Germline |
Chr9:37424843 |
Pathogenic |
Primary hyperoxaluria, type II Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
CA275903 |
rs_180177319 |
4 SubmittersRCV000186448RCV001857597 |
NM_012203.2(GRHPR):c.102G>A (p.Trp34Ter)
|
SNV Germline |
Chr9:37424863 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type II Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
CA275883 |
rs_180177304 |
4 SubmittersRCV000186438RCV001390116 |
NM_012203.2(GRHPR):c.203T>C (p.Leu68Pro)
|
SNV Germline |
Chr9:37424964 |
Pathogenic |
Primary hyperoxaluria, type II |
No Assertion Criteria Provided |
CA275885 |
rs_180177305 |
1 SubmittersRCV000186439 |
NM_012203.2(GRHPR):c.287G>T (p.Arg96Leu)
|
SNV Germline |
Chr9:37425994 |
Pathogenic |
Primary hyperoxaluria, type II |
No Assertion Criteria Provided |
CA275887 |
rs_796052078 |
1 SubmittersRCV000186440 |
NM_012203.2(GRHPR):c.478G>A (p.Gly160Arg)
|
SNV Germline |
Chr9:37428557 |
Likely pathogenic |
Primary hyperoxaluria, type II |
Criteria Provided Single Submitter |
CA275889 |
rs_180177312 |
2 SubmittersRCV000186441 |
NM_012203.2(GRHPR):c.493+2T>A
|
SNV Germline |
Chr9:37428574 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type II Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
CA275905 |
rs_180177313 |
4 SubmittersRCV000186450RCV001238281 |
NM_012203.2(GRHPR):c.494G>A (p.Gly165Asp)
|
SNV Germline |
Chr9:37429732 |
Pathogenic |
Primary hyperoxaluria, type II Primary hyperoxaluria Condition: not provided GRHPR-related disorder |
Criteria Provided Multiple Submitters No Conflicts |
CA275891 |
rs_180177314 |
10 SubmittersRCV000186442RCV000585941RCV000802868RCV003927729 |
NM_012203.2(GRHPR):c.735-1G>A
|
SNV Germline |
Chr9:37432007 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type II Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
CA275906 |
rs_180177317 |
8 SubmittersRCV000186451RCV000806551 |
NM_012203.2(GRHPR):c.905G>A (p.Arg302His)
|
SNV Germline |
Chr9:37436700 |
Conflicting classifications of pathogenicity |
Primary hyperoxaluria, type II not specified |
Criteria Provided Conflicting Classifications |
CA275895 |
rs_180177323 |
3 SubmittersRCV000186444RCV004525893 |
NM_012203.2(GRHPR):c.934A>G (p.Asn312Asp)
|
SNV Germline |
Chr9:37436729 |
Likely pathogenic |
Primary hyperoxaluria, type II |
Criteria Provided Single Submitter |
CA275897 |
rs_180177324 |
2 SubmittersRCV000186445 |
NM_012203.2(GRHPR):c.965T>C (p.Met322Thr)
|
SNV Germline |
Chr9:37436760 |
Pathogenic |
Primary hyperoxaluria, type II |
No Assertion Criteria Provided |
CA275901 |
rs_180177325 |
1 SubmittersRCV000186447 |
NM_012203.2(GRHPR):c.965T>G (p.Met322Arg)
|
SNV Germline |
Chr9:37436760 |
Likely pathogenic |
Primary hyperoxaluria, type II Condition: not provided |
Criteria Provided Single Submitter |
CA275899 |
rs_180177325 |
2 SubmittersRCV000186446RCV002517834 |
NM_000030.3(AGXT):c.1111G>A (p.Glu371Lys)
|
SNV Germline |
Chr2:240878753 |
Conflicting classifications of pathogenicity |
Condition: not provided Primary hyperoxaluria, type I |
Criteria Provided Conflicting Classifications |
CA2209424 |
rs_369664123 |
4 SubmittersRCV000341567RCV001140245 |
NM_000030.3(AGXT):c.601G>A (p.Asp201Asn)
|
SNV Germline |
Chr2:240873983 |
Conflicting classifications of pathogenicity |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Conflicting Classifications |
CA10612912 |
rs_886055840 |
4 SubmittersRCV000268109RCV002519959 |
NM_000030.3(AGXT):c.930C>T (p.Phe310=)
|
SNV Germline |
Chr2:240877620 |
Conflicting classifications of pathogenicity |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Conflicting Classifications |
CA10612922 |
rs_886055842 |
2 SubmittersRCV000294212RCV001414441 |
NM_000030.3(AGXT):c.942+14T>G
|
SNV Germline |
Chr2:240877646 |
Conflicting classifications of pathogenicity |
Primary hyperoxaluria, type I |
Criteria Provided Conflicting Classifications |
CA10613327 |
rs_886055843 |
2 SubmittersRCV000670177 |
NM_000030.3(AGXT):c.1071+12C>T
|
SNV Germline |
Chr2:240878162 |
Conflicting classifications of pathogenicity |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Conflicting Classifications |
CA2209396 |
rs_375775541 |
2 SubmittersRCV000295493RCV001409494 |
NM_000030.3(AGXT):c.1071+13G>A
|
SNV Germline |
Chr2:240878163 |
Conflicting classifications of pathogenicity |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Conflicting Classifications |
CA2209397 |
rs_758413374 |
2 SubmittersRCV000335602RCV003736729 |
NM_000030.3(AGXT):c.165+12G>C
|
SNV Germline |
Chr2:240869042 |
Conflicting classifications of pathogenicity |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Conflicting Classifications |
CA2208992 |
rs_201989825 |
2 SubmittersRCV000292295RCV003718211 |
NM_012203.2(GRHPR):c.468C>T (p.Val156=)
|
SNV Germline |
Chr9:37428547 |
Conflicting classifications of pathogenicity |
Primary hyperoxaluria, type II Condition: not provided Nephrolithiasis/nephrocalcinosis |
Criteria Provided Conflicting Classifications |
CA5059061 |
rs_142509393 |
5 SubmittersRCV000405730RCV000885870RCV002338963 |
NM_012203.2(GRHPR):c.801A>C (p.Gly267=)
|
SNV Germline |
Chr9:37432074 |
Conflicting classifications of pathogenicity |
Primary hyperoxaluria, type II Nephrolithiasis/nephrocalcinosis Condition: not provided |
Criteria Provided Conflicting Classifications |
CA5059268 |
rs_141800325 |
4 SubmittersRCV000306847RCV002418225RCV000967757 |
NM_012203.2(GRHPR):c.286C>T (p.Arg96Cys)
|
SNV Germline |
Chr9:37425993 |
Conflicting classifications of pathogenicity |
Primary hyperoxaluria, type II Condition: not provided GRHPR-related disorder |
Criteria Provided Conflicting Classifications |
CA5058973 |
rs_78920863 |
6 SubmittersRCV000319185RCV000896260RCV003950302 |
NM_012203.2(GRHPR):c.336C>T (p.Ala112=)
|
SNV Germline |
Chr9:37426586 |
Conflicting classifications of pathogenicity |
Primary hyperoxaluria, type II Condition: not provided Nephrolithiasis/nephrocalcinosis |
Criteria Provided Conflicting Classifications |
CA5059006 |
rs_148778319 |
4 SubmittersRCV000334444RCV000911021RCV004022118 |
NM_012203.2(GRHPR):c.682A>G (p.Lys228Glu)
|
SNV Germline |
Chr9:37430594 |
Conflicting classifications of pathogenicity |
Primary hyperoxaluria, type II Condition: not provided |
Criteria Provided Conflicting Classifications |
CA5059175 |
rs_74692381 |
2 SubmittersRCV000365182RCV002058803 |
NM_012203.2(GRHPR):c.214+2T>G
|
SNV Unknown |
Chr9:37424977 |
Likely pathogenic |
Primary hyperoxaluria, type II |
Criteria Provided Multiple Submitters No Conflicts |
CA16041324 |
rs_1057517398 |
2 SubmittersRCV000410412 |
NM_012203.2(GRHPR):c.337G>T (p.Glu113Ter)
|
SNV Germline |
Chr9:37426587 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type II Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
CA16041326 |
rs_180177307 |
3 SubmittersRCV000412226RCV002523876 |
NM_000030.3(AGXT):c.743C>T (p.Ala248Val)
|
SNV Germline |
Chr2:240875171 |
Conflicting classifications of pathogenicity |
Condition: not provided Primary hyperoxaluria, type I Inborn genetic diseases |
Criteria Provided Conflicting Classifications |
CA2209225 |
rs_372482918 |
5 SubmittersRCV000436183RCV001276582RCV003243122 |
NM_012203.2(GRHPR):c.955G>T (p.Gly319Trp)
|
SNV Germline |
Chr9:37436750 |
Conflicting classifications of pathogenicity |
Condition: not provided Primary hyperoxaluria, type II |
Criteria Provided Conflicting Classifications |
CA5059348 |
rs_142835989 |
3 SubmittersRCV000490104RCV001167414 |
NM_012203.2(GRHPR):c.404+5G>A
|
SNV Germline |
Chr9:37426659 |
Pathogenic/Likely pathogenic |
Nephrocalcinosis Nephrolithiasis Condition: not provided Primary hyperoxaluria, type II |
Criteria Provided Multiple Submitters No Conflicts |
|
rs_757796926 |
5 SubmittersRCV000662322RCV001223285RCV001835065 |
NM_000030.3(AGXT):c.524+2T>A
|
SNV Unknown |
Chr2:240871451 |
Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Multiple Submitters No Conflicts |
|
rs_1553648568 |
2 SubmittersRCV000666434 |
NM_000030.3(AGXT):c.781C>G (p.His261Asp)
|
SNV Germline |
Chr2:240875939 |
Likely pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
|
rs_778567956 |
3 SubmittersRCV000671808RCV002532115 |
NM_000030.3(AGXT):c.145A>C (p.Met49Leu)
|
SNV Germline |
Chr2:240869010 |
Conflicting classifications of pathogenicity |
Primary hyperoxaluria, type I Condition: not provided not specified |
Criteria Provided Conflicting Classifications |
|
rs_74205173 |
6 SubmittersRCV000665056RCV000885301RCV001584529 |
NM_000030.3(AGXT):c.681-1G>T
|
SNV Unknown |
Chr2:240875108 |
Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
rs_112673831 |
1 SubmittersRCV000666318 |
NM_000030.3(AGXT):c.466G>C (p.Gly156Arg)
|
SNV Germline |
Chr2:240871391 |
Pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
|
rs_121908530 |
2 SubmittersRCV000668336RCV002530741 |
NM_000030.3(AGXT):c.423G>C (p.Glu141Asp)
|
SNV Germline |
Chr2:240870708 |
Conflicting classifications of pathogenicity |
Primary hyperoxaluria, type I |
Criteria Provided Conflicting Classifications |
|
rs_180177217 |
2 SubmittersRCV000668762 |
NM_000030.3(AGXT):c.423+1G>A
|
SNV Unknown |
Chr2:240870709 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Multiple Submitters No Conflicts |
|
rs_1553648493 |
2 SubmittersRCV000674812 |
NM_000030.3(AGXT):c.776+2T>G
|
SNV Unknown |
Chr2:240875206 |
Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
rs_1553649007 |
1 SubmittersRCV000665763 |
NM_012203.2(GRHPR):c.1A>T (p.Met1Leu)
|
SNV Unknown |
Chr9:37422751 |
Likely pathogenic |
Primary hyperoxaluria, type II |
Criteria Provided Single Submitter |
|
rs_1554746094 |
1 SubmittersRCV000673070 |
NM_012203.2(GRHPR):c.214+1G>T
|
SNV Germline |
Chr9:37424976 |
Likely pathogenic |
Primary hyperoxaluria, type II Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
|
rs_1244822375 |
2 SubmittersRCV000666372RCV002530681 |
NM_012203.2(GRHPR):c.2T>G (p.Met1Arg)
|
SNV Unknown |
Chr9:37422752 |
Likely pathogenic |
Primary hyperoxaluria, type II |
Criteria Provided Single Submitter |
|
rs_1554746097 |
1 SubmittersRCV000666459 |
NM_012203.2(GRHPR):c.599-1G>C
|
SNV Unknown |
Chr9:37430510 |
Likely pathogenic |
Primary hyperoxaluria, type II |
Criteria Provided Multiple Submitters No Conflicts |
|
rs_1422977131 |
2 SubmittersRCV000671056 |
NM_012203.2(GRHPR):c.889G>A (p.Ala297Thr)
|
SNV Germline |
Chr9:37436684 |
Conflicting classifications of pathogenicity |
Primary hyperoxaluria, type II |
Criteria Provided Conflicting Classifications |
|
rs_200632069 |
2 SubmittersRCV000666135 |
NM_012203.2(GRHPR):c.958G>T (p.Glu320Ter)
|
SNV Germline |
Chr9:37436753 |
Conflicting classifications of pathogenicity |
Primary hyperoxaluria, type II Condition: not provided |
Criteria Provided Conflicting Classifications |
|
rs_1331106064 |
3 SubmittersRCV000673330RCV002531337 |
NM_012203.2(GRHPR):c.1A>G (p.Met1Val)
|
SNV Germline |
Chr9:37422751 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type II |
Criteria Provided Multiple Submitters No Conflicts |
|
rs_1554746094 |
2 SubmittersRCV000669576 |
NM_012203.2(GRHPR):c.214+1G>C
|
SNV Unknown |
Chr9:37424976 |
Likely pathogenic |
Primary hyperoxaluria, type II |
Criteria Provided Single Submitter |
|
rs_1244822375 |
1 SubmittersRCV000667472 |
NM_012203.2(GRHPR):c.405-1G>A
|
SNV Unknown |
Chr9:37428483 |
Likely pathogenic |
Primary hyperoxaluria, type II |
Criteria Provided Single Submitter |
|
rs_779208888 |
1 SubmittersRCV000669610 |
NM_012203.2(GRHPR):c.598+1G>T
|
SNV Germline |
Chr9:37429837 |
Likely pathogenic |
Primary hyperoxaluria, type II Condition: not provided |
Criteria Provided Single Submitter |
|
rs_111256477 |
2 SubmittersRCV000664698RCV000723226 |
NM_012203.2(GRHPR):c.866-2A>G
|
SNV Germline |
Chr9:37436659 |
Conflicting classifications of pathogenicity |
Primary hyperoxaluria, type II |
Criteria Provided Conflicting Classifications |
|
rs_200316691 |
2 SubmittersRCV000668309 |
NM_012203.2(GRHPR):c.287+2T>C
|
SNV Germline |
Chr9:37425996 |
Likely pathogenic |
Condition: not provided Primary hyperoxaluria, type II |
Criteria Provided Single Submitter |
|
rs_1564297234 |
2 SubmittersRCV000722683RCV003447157 |
NM_000030.3(AGXT):c.949C>T (p.Arg317Trp)
|
SNV Germline |
Chr2:240878028 |
Conflicting classifications of pathogenicity |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Conflicting Classifications |
|
rs_774030578 |
4 SubmittersRCV000778603RCV001759471 |
NM_012203.2(GRHPR):c.139C>T (p.Arg47Ter)
|
SNV Germline |
Chr9:37424900 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type II Condition: not provided GRHPR-related disorder |
Criteria Provided Multiple Submitters No Conflicts |
|
rs_774654020 |
5 SubmittersRCV000779582RCV001042856RCV003392593 |
NM_000030.3(AGXT):c.1084G>A (p.Gly362Ser)
|
SNV Germline |
Chr2:240878726 |
Conflicting classifications of pathogenicity |
Primary hyperoxaluria Condition: not provided Primary hyperoxaluria, type I |
Criteria Provided Conflicting Classifications |
|
rs_569643246 |
3 SubmittersRCV000780822RCV001869156RCV003461055 |
NM_012203.2(GRHPR):c.734+1G>A
|
SNV Germline |
Chr9:37430647 |
Pathogenic/Likely pathogenic |
Condition: not provided Primary hyperoxaluria, type II |
Criteria Provided Multiple Submitters No Conflicts |
|
rs_148049120 |
6 SubmittersRCV000805272RCV001784426 |
NM_000030.3(AGXT):c.1023C>A (p.Asp341Glu)
|
SNV Germline |
Chr2:240878102 |
Conflicting classifications of pathogenicity |
Condition: not provided Primary hyperoxaluria, type I Inborn genetic diseases |
Criteria Provided Conflicting Classifications |
|
rs_144007007 |
4 SubmittersRCV000883323RCV001271651RCV004028324 |
NM_000030.3(AGXT):c.567C>T (p.Gly189=)
|
SNV Germline |
Chr2:240873021 |
Conflicting classifications of pathogenicity |
Condition: not provided Primary hyperoxaluria, type I AGXT-related disorder |
Criteria Provided Conflicting Classifications |
|
rs_373612587 |
4 SubmittersRCV000899433RCV001143776RCV003968225 |
NM_000030.3(AGXT):c.537G>C (p.Leu179=)
|
SNV Germline |
Chr2:240872991 |
Conflicting classifications of pathogenicity |
Condition: not provided Primary hyperoxaluria, type I |
Criteria Provided Conflicting Classifications |
|
rs_565927450 |
3 SubmittersRCV000927058RCV001143775 |
NM_000030.3(AGXT):c.885G>A (p.Ala295=)
|
SNV Germline |
Chr2:240877575 |
Conflicting classifications of pathogenicity |
Condition: not provided Primary hyperoxaluria, type I |
Criteria Provided Conflicting Classifications |
|
rs_377132245 |
3 SubmittersRCV000927649RCV001139467 |
NM_012203.2(GRHPR):c.666C>G (p.Thr222=)
|
SNV Germline |
Chr9:37430578 |
Conflicting classifications of pathogenicity |
Condition: not provided Primary hyperoxaluria, type II Nephrolithiasis/nephrocalcinosis |
Criteria Provided Conflicting Classifications |
|
rs_146227450 |
4 SubmittersRCV000913271RCV001165837RCV002363365 |
NM_012203.2(GRHPR):c.255C>T (p.Ile85=)
|
SNV Germline |
Chr9:37425962 |
Conflicting classifications of pathogenicity |
Condition: not provided Primary hyperoxaluria, type II Nephrolithiasis/nephrocalcinosis |
Criteria Provided Conflicting Classifications |
|
rs_372985143 |
3 SubmittersRCV000942675RCV001167946RCV004029729 |
NM_012203.2(GRHPR):c.666C>T (p.Thr222=)
|
SNV Germline |
Chr9:37430578 |
Conflicting classifications of pathogenicity |
Condition: not provided Primary hyperoxaluria, type II |
Criteria Provided Conflicting Classifications |
|
rs_146227450 |
3 SubmittersRCV000941275RCV001165838 |
NM_012203.2(GRHPR):c.84-4G>A
|
SNV Germline |
Chr9:37424841 |
Conflicting classifications of pathogenicity |
Condition: not provided Primary hyperoxaluria, type II Nephrolithiasis/nephrocalcinosis |
Criteria Provided Conflicting Classifications |
|
rs_778578725 |
3 SubmittersRCV000982380RCV001274436RCV004030067 |
NM_012203.2(GRHPR):c.83+1G>C
|
SNV Germline |
Chr9:37422834 |
Likely pathogenic |
Condition: not provided Primary hyperoxaluria, type II |
Criteria Provided Multiple Submitters No Conflicts |
|
rs_1822898131 |
2 SubmittersRCV001044981RCV003467737 |
NM_000030.3(AGXT):c.40C>T (p.Leu14=)
|
SNV Germline |
Chr2:240868905 |
Conflicting classifications of pathogenicity |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Conflicting Classifications |
|
rs_2058975287 |
2 SubmittersRCV001139350RCV002070655 |
NM_000030.3(AGXT):c.214A>C (p.Asn72His)
|
SNV Germline |
Chr2:240869218 |
Conflicting classifications of pathogenicity |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Conflicting Classifications |
|
rs_754637713 |
2 SubmittersRCV001141970RCV001858930 |
NM_000030.3(AGXT):c.510G>A (p.Gly170=)
|
SNV Germline |
Chr2:240871435 |
Conflicting classifications of pathogenicity |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Conflicting Classifications |
|
rs_965707125 |
2 SubmittersRCV001143773RCV002557063 |
NM_000030.3(AGXT):c.1065G>C (p.Thr355=)
|
SNV Germline |
Chr2:240878144 |
Conflicting classifications of pathogenicity |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Conflicting Classifications |
|
rs_143488099 |
2 SubmittersRCV001140244RCV001423074 |
NM_012203.2(GRHPR):c.543G>C (p.Leu181=)
|
SNV Germline |
Chr9:37429781 |
Conflicting classifications of pathogenicity |
Primary hyperoxaluria, type II Condition: not provided |
Criteria Provided Conflicting Classifications |
|
rs_370395134 |
3 SubmittersRCV001169810RCV001459259 |
NM_012203.2(GRHPR):c.690C>A (p.Phe230Leu)
|
SNV Germline |
Chr9:37430602 |
Conflicting classifications of pathogenicity |
Primary hyperoxaluria, type II Condition: not provided Nephrolithiasis/nephrocalcinosis |
Criteria Provided Conflicting Classifications |
|
rs_185747820 |
4 SubmittersRCV001167411RCV001355504RCV002365817 |
NM_000030.3(AGXT):c.358G>A (p.Gly120Arg)
|
SNV Germline |
Chr2:240869362 |
Conflicting classifications of pathogenicity |
Condition: not provided Primary hyperoxaluria, type I |
Criteria Provided Conflicting Classifications |
|
rs_747043550 |
3 SubmittersRCV001235424RCV002484288 |
NM_012203.2(GRHPR):c.391G>A (p.Glu131Lys)
|
SNV Germline |
Chr9:37426641 |
Conflicting classifications of pathogenicity |
Condition: not provided Primary hyperoxaluria, type II |
Criteria Provided Conflicting Classifications |
|
rs_369339903 |
3 SubmittersRCV001243580RCV001279920 |
NM_012203.2(GRHPR):c.742G>A (p.Val248Ile)
|
SNV Germline |
Chr9:37432015 |
Conflicting classifications of pathogenicity |
Condition: not provided Primary hyperoxaluria, type II |
Criteria Provided Conflicting Classifications |
|
rs_369950120 |
4 SubmittersRCV001244319RCV001829926 |
NM_000030.3(AGXT):c.534C>G (p.Cys178Trp)
|
SNV Germline |
Chr2:240872988 |
Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
rs_1400552764 |
1 SubmittersRCV001280544 |
NM_000030.3(AGXT):c.198C>A (p.Tyr66Ter)
|
SNV Germline |
Chr2:240869202 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Multiple Submitters No Conflicts |
|
rs_121908521 |
3 SubmittersRCV001263729 |
NM_000030.3(AGXT):c.252T>A (p.Cys84Ter)
|
SNV Unknown |
Chr2:240869256 |
Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
rs_2058978388 |
1 SubmittersRCV001263730 |
NM_000030.3(AGXT):c.358G>T (p.Gly120Ter)
|
SNV Unknown |
Chr2:240869362 |
Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
rs_747043550 |
1 SubmittersRCV001263731 |
NM_000030.3(AGXT):c.412G>T (p.Glu138Ter)
|
SNV Unknown |
Chr2:240870697 |
Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
rs_2058986411 |
1 SubmittersRCV001263732 |
NM_000030.3(AGXT):c.439A>T (p.Lys147Ter)
|
SNV Unknown |
Chr2:240871364 |
Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
rs_1193344118 |
1 SubmittersRCV001263733 |
NM_000030.3(AGXT):c.653C>A (p.Ser218Ter)
|
SNV Unknown |
Chr2:240874035 |
Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
rs_180177253 |
1 SubmittersRCV001263734 |
NM_012203.2(GRHPR):c.136G>T (p.Glu46Ter)
|
SNV Unknown |
Chr9:37424897 |
Likely pathogenic |
Primary hyperoxaluria, type II |
Criteria Provided Single Submitter |
|
rs_202022170 |
1 SubmittersRCV001264362 |
NM_012203.2(GRHPR):c.306C>A (p.Tyr102Ter)
|
SNV Unknown |
Chr9:37426556 |
Likely pathogenic |
Primary hyperoxaluria, type II |
Criteria Provided Single Submitter |
|
rs_1823086297 |
1 SubmittersRCV001264363 |
NM_012203.2(GRHPR):c.457C>T (p.Gln153Ter)
|
SNV Unknown |
Chr9:37428536 |
Likely pathogenic |
Primary hyperoxaluria, type II |
Criteria Provided Single Submitter |
|
rs_1341484544 |
1 SubmittersRCV001264364 |
NM_012203.2(GRHPR):c.34A>G (p.Thr12Ala)
|
SNV Germline |
Chr9:37422784 |
Conflicting classifications of pathogenicity |
Primary hyperoxaluria, type II Condition: not provided |
No Assertion Criteria Provided |
|
rs_761847384 |
2 SubmittersRCV001279917RCV001355033 |
NM_012203.2(GRHPR):c.578C>T (p.Ala193Val)
|
SNV Germline |
Chr9:37429816 |
Conflicting classifications of pathogenicity |
Primary hyperoxaluria, type II Condition: not provided Nephrolithiasis/nephrocalcinosis |
Criteria Provided Conflicting Classifications |
|
rs_771231175 |
3 SubmittersRCV001279921RCV001464865RCV004035496 |
NM_012203.2(GRHPR):c.865+1G>T
|
SNV Germline |
Chr9:37432139 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type II Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
|
rs_771990662 |
2 SubmittersRCV001536058RCV001873801 |
NM_000030.3(AGXT):c.305T>A (p.Val102Asp)
|
SNV Germline |
Chr2:240869309 |
Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
rs_1304689724 |
1 SubmittersRCV001785899 |
NM_000030.3(AGXT):c.517T>C (p.Cys173Arg)
|
SNV Germline |
Chr2:240871442 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Multiple Submitters No Conflicts |
|
rs_2106428650 |
2 SubmittersRCV003467981 |
NM_000030.3(AGXT):c.215A>T (p.Asn72Ile)
|
SNV Germline |
Chr2:240869219 |
Pathogenic/Likely pathogenic |
Condition: not provided Primary hyperoxaluria, type I |
Criteria Provided Multiple Submitters No Conflicts |
|
rs_113879010 |
2 SubmittersRCV001883482RCV003470988 |
NM_000030.3(AGXT):c.1065G>A (p.Thr355=)
|
SNV Germline |
Chr2:240878144 |
Conflicting classifications of pathogenicity |
Condition: not provided Primary hyperoxaluria, type I AGXT-related disorder |
Criteria Provided Conflicting Classifications |
|
rs_143488099 |
3 SubmittersRCV001980161RCV002507675RCV003978440 |
NM_000030.3(AGXT):c.942+1G>A
|
SNV Germline |
Chr2:240877633 |
Pathogenic/Likely pathogenic |
Condition: not provided Primary hyperoxaluria, type I |
Criteria Provided Multiple Submitters No Conflicts |
|
rs_180177297 |
2 SubmittersRCV001953521RCV004571733 |
NM_000030.3(AGXT):c.528C>A (p.Tyr176Ter)
|
SNV Unknown |
Chr2:240872982 |
Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV002308178 |
NM_000030.3(AGXT):c.706A>T (p.Lys236Ter)
|
SNV Unknown |
Chr2:240875134 |
Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV002309366 |
NM_012203.2(GRHPR):c.496C>T (p.Gln166Ter)
|
SNV Germline |
Chr9:37429734 |
Pathogenic/Likely pathogenic |
Primary hyperoxaluria, type II Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
|
|
2 SubmittersRCV002310066RCV003542352 |
NM_000030.3(AGXT):c.934A>T (p.Lys312Ter)
|
SNV Unknown |
Chr2:240877624 |
Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV002310460 |
NM_012203.2(GRHPR):c.170G>A (p.Cys57Tyr)
|
SNV Germline |
Chr9:37424931 |
Likely pathogenic |
Primary hyperoxaluria, type II |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV002470188 |
NM_012203.2(GRHPR):c.181G>A (p.Asp61Asn)
|
SNV Germline |
Chr9:37424942 |
Conflicting classifications of pathogenicity |
Condition: not provided Primary hyperoxaluria, type II |
Criteria Provided Conflicting Classifications |
|
|
2 SubmittersRCV003072288RCV003447334 |
NM_000030.3(AGXT):c.525-2A>T
|
SNV Germline |
Chr2:240872977 |
Pathogenic/Likely pathogenic |
Condition: not provided Primary hyperoxaluria, type I |
Criteria Provided Multiple Submitters No Conflicts |
|
|
2 SubmittersRCV003084185RCV003465952 |
NM_000030.3(AGXT):c.1161C>A (p.Cys387Ter)
|
SNV Germline |
Chr2:240878803 |
Pathogenic |
Condition: not provided Primary hyperoxaluria, type I |
Criteria Provided Multiple Submitters No Conflicts |
|
|
2 SubmittersRCV003072792RCV003475507 |
NM_000030.3(AGXT):c.121G>C (p.Gly41Arg)
|
SNV Germline |
Chr2:240868986 |
Pathogenic/Likely pathogenic |
Condition: not provided Primary hyperoxaluria, type I |
Criteria Provided Multiple Submitters No Conflicts |
|
|
2 SubmittersRCV002664289RCV003466000 |
NM_000030.3(AGXT):c.188G>A (p.Gly63Asp)
|
SNV Germline |
Chr2:240869192 |
Conflicting classifications of pathogenicity |
Condition: not provided Primary hyperoxaluria, type I |
Criteria Provided Conflicting Classifications |
|
|
2 SubmittersRCV002651631RCV003445215 |
NM_000030.3(AGXT):c.1078C>T (p.Arg360Trp)
|
SNV Germline |
Chr2:240878720 |
Likely pathogenic |
Condition: not provided Primary hyperoxaluria, type I |
Criteria Provided Multiple Submitters No Conflicts |
|
|
2 SubmittersRCV002651634RCV004572813 |
NM_000030.3(AGXT):c.596-1G>A
|
SNV Germline |
Chr2:240873977 |
Pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV002512430 |
NM_000030.3(AGXT):c.490C>T (p.Gln164Ter)
|
SNV Germline |
Chr2:240871415 |
Pathogenic/Likely pathogenic |
Condition: not provided Primary hyperoxaluria, type I |
Criteria Provided Multiple Submitters No Conflicts |
|
|
2 SubmittersRCV002880908RCV003464622 |
NM_012203.2(GRHPR):c.626C>T (p.Ser209Phe)
|
SNV Germline |
Chr9:37430538 |
Pathogenic |
Condition: not provided Primary hyperoxaluria, type II |
Criteria Provided Multiple Submitters No Conflicts |
|
|
3 SubmittersRCV002943748RCV003445187 |
NM_012203.2(GRHPR):c.370C>T (p.Arg124Cys)
|
SNV Germline |
Chr9:37426620 |
Likely pathogenic |
Condition: not provided Primary hyperoxaluria, type II |
Criteria Provided Multiple Submitters No Conflicts |
|
|
2 SubmittersRCV002995022RCV004572502 |
NM_012203.2(GRHPR):c.905G>C (p.Arg302Pro)
|
SNV Germline |
Chr9:37436700 |
Conflicting classifications of pathogenicity |
not specified Primary hyperoxaluria, type II |
Criteria Provided Conflicting Classifications |
|
|
2 SubmittersRCV003317900RCV003445232 |
NM_000030.3(AGXT):c.190A>T (p.Ile64Phe)
|
SNV Germline |
Chr2:240869194 |
Conflicting classifications of pathogenicity |
Primary hyperoxaluria, type I not specified |
Criteria Provided Conflicting Classifications |
|
|
2 SubmittersRCV003445263RCV003479520 |
NM_000030.3(AGXT):c.191T>A (p.Ile64Asn)
|
SNV Germline |
Chr2:240869195 |
Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003445264 |
NM_000030.3(AGXT):c.292G>C (p.Asp98His)
|
SNV Germline |
Chr2:240869296 |
Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003445266 |
NM_000030.3(AGXT):c.352C>A (p.Arg118Ser)
|
SNV Germline |
Chr2:240869356 |
Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003445267 |
NM_000030.3(AGXT):c.402C>G (p.Tyr134Ter)
|
SNV Germline |
Chr2:240870687 |
Pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003445269 |
NM_000030.3(AGXT):c.560C>A (p.Ser187Tyr)
|
SNV Germline |
Chr2:240873014 |
Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003445271 |
NM_000030.3(AGXT):c.595+1G>T
|
SNV Germline |
Chr2:240873050 |
Pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003445273 |
NM_000030.3(AGXT):c.638C>A (p.Ala213Asp)
|
SNV Germline |
Chr2:240874020 |
Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003445274 |
NM_000030.3(AGXT):c.779A>G (p.Tyr260Cys)
|
SNV Germline |
Chr2:240875937 |
Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003445278 |
NM_012203.2(GRHPR):c.68T>C (p.Leu23Pro)
|
SNV Germline |
Chr9:37422818 |
Pathogenic |
Primary hyperoxaluria, type II |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003447375 |
NM_012203.2(GRHPR):c.344C>A (p.Ala115Glu)
|
SNV Germline |
Chr9:37426594 |
Conflicting classifications of pathogenicity |
Primary hyperoxaluria, type II |
Criteria Provided Conflicting Classifications |
|
|
2 SubmittersRCV003447376 |
NM_012203.2(GRHPR):c.412T>C (p.Trp138Arg)
|
SNV Germline |
Chr9:37428491 |
Likely pathogenic |
Primary hyperoxaluria, type II |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003447379 |
NM_012203.2(GRHPR):c.287G>A (p.Arg96His)
|
SNV Germline |
Chr9:37425994 |
Likely pathogenic |
Primary hyperoxaluria, type II |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003447388 |
NM_012203.2(GRHPR):c.288-1G>C
|
SNV Germline |
Chr9:37426537 |
Likely pathogenic |
Primary hyperoxaluria, type II |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003447389 |
NM_000030.3(AGXT):c.283G>T (p.Glu95Ter)
|
SNV Unknown |
Chr2:240869287 |
Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003476362 |
NM_012203.2(GRHPR):c.83+1G>A
|
SNV Unknown |
Chr9:37422834 |
Likely pathogenic |
Primary hyperoxaluria, type II |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003476415 |
NM_012203.2(GRHPR):c.101G>A (p.Trp34Ter)
|
SNV Unknown |
Chr9:37424862 |
Likely pathogenic |
Primary hyperoxaluria, type II |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003468301 |
NM_012203.2(GRHPR):c.865+2T>C
|
SNV Unknown |
Chr9:37432140 |
Likely pathogenic |
Primary hyperoxaluria, type II |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003468303 |
NM_012203.2(GRHPR):c.599-1G>A
|
SNV Unknown |
Chr9:37430510 |
Likely pathogenic |
Primary hyperoxaluria, type II |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003468306 |
NM_000030.3(AGXT):c.1072-1G>A
|
SNV Unknown |
Chr2:240878713 |
Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003467992 |
NM_000030.3(AGXT):c.1014C>A (p.Tyr338Ter)
|
SNV Unknown |
Chr2:240878093 |
Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003468010 |
NM_000030.3(AGXT):c.79G>T (p.Gly27Trp)
|
SNV Germline |
Chr2:240868944 |
Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003448955 |
NM_000030.3(AGXT):c.731T>A (p.Ile244Asn)
|
SNV Germline |
Chr2:240875159 |
Pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003448957 |
NM_000030.3(AGXT):c.1120G>C (p.Asp374His)
|
SNV Germline |
Chr2:240878762 |
Pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003448960 |
NM_012203.2(GRHPR):c.494-2A>G
|
SNV Germline |
Chr9:37429730 |
Pathogenic |
Primary hyperoxaluria, type II |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003448961 |
NM_012203.2(GRHPR):c.761T>C (p.Leu254Pro)
|
SNV Germline |
Chr9:37432034 |
Pathogenic |
Primary hyperoxaluria, type II |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003448962 |
NM_012203.2(GRHPR):c.806A>G (p.Asp269Gly)
|
SNV Germline |
Chr9:37432079 |
Likely pathogenic |
Primary hyperoxaluria, type II |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003448963 |
NM_000030.3(AGXT):c.469G>T (p.Glu157Ter)
|
SNV Germline |
Chr2:240871394 |
Pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003448968 |
NM_000030.3(AGXT):c.598A>G (p.Ile200Val)
|
SNV Germline |
Chr2:240873980 |
Conflicting classifications of pathogenicity |
Primary hyperoxaluria, type I Inborn genetic diseases |
Criteria Provided Conflicting Classifications |
|
|
2 SubmittersRCV003448970RCV004364712 |
NM_000030.3(AGXT):c.658A>T (p.Ile220Phe)
|
SNV Germline |
Chr2:240874040 |
Pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003448971 |
NM_000030.3(AGXT):c.693C>G (p.Tyr231Ter)
|
SNV Germline |
Chr2:240875121 |
Pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003448972 |
NM_000030.3(AGXT):c.140G>A (p.Gly47Glu)
|
SNV Germline |
Chr2:240869005 |
Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003468678 |
NM_000030.3(AGXT):c.242C>G (p.Ser81Trp)
|
SNV Germline |
Chr2:240869246 |
Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003468681 |
NM_000030.3(AGXT):c.244G>A (p.Gly82Arg)
|
SNV Germline |
Chr2:240869248 |
Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003468682 |
NM_000030.3(AGXT):c.326G>A (p.Gly109Glu)
|
SNV Germline |
Chr2:240869330 |
Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003468687 |
NM_000030.3(AGXT):c.346G>T (p.Gly116Trp)
|
SNV Germline |
Chr2:240869350 |
Pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003468688 |
NM_000030.3(AGXT):c.359-2A>G
|
SNV Germline |
Chr2:240870642 |
Likely pathogenic |
Primary hyperoxaluria, type I Condition: not provided |
Criteria Provided Multiple Submitters No Conflicts |
|
|
2 SubmittersRCV003468689RCV003549105 |
NM_000030.3(AGXT):c.423+2T>C
|
SNV Germline |
Chr2:240870710 |
Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003468691 |
NM_000030.3(AGXT):c.458T>A (p.Leu153Ter)
|
SNV Germline |
Chr2:240871383 |
Pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003468692 |
NM_000030.3(AGXT):c.469G>C (p.Glu157Gln)
|
SNV Germline |
Chr2:240871394 |
Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003468693 |
NM_000030.3(AGXT):c.482G>A (p.Gly161Asp)
|
SNV Germline |
Chr2:240871407 |
Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003468694 |
NM_000030.3(AGXT):c.551C>A (p.Ser184Ter)
|
SNV Germline |
Chr2:240873005 |
Pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003468696 |
NM_000030.3(AGXT):c.593A>C (p.Gln198Pro)
|
SNV Germline |
Chr2:240873047 |
Pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003468698 |
NM_000030.3(AGXT):c.595+1G>A
|
SNV Germline |
Chr2:240873050 |
Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003468700 |
NM_000030.3(AGXT):c.595+2T>G
|
SNV Germline |
Chr2:240873051 |
Pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003468701 |
NM_000030.3(AGXT):c.602A>T (p.Asp201Val)
|
SNV Germline |
Chr2:240873984 |
Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003468703 |
NM_000030.3(AGXT):c.622C>T (p.Gln208Ter)
|
SNV Germline |
Chr2:240874004 |
Pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003468704 |
NM_000030.3(AGXT):c.627G>T (p.Lys209Asn)
|
SNV Germline |
Chr2:240874009 |
Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003468705 |
NM_000030.3(AGXT):c.632T>G (p.Leu211Arg)
|
SNV Germline |
Chr2:240874014 |
Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003468706 |
NM_000030.3(AGXT):c.667A>C (p.Ser223Arg)
|
SNV Germline |
Chr2:240874049 |
Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003468707 |
NM_000030.3(AGXT):c.680+1G>T
|
SNV Germline |
Chr2:240874063 |
Pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003468709 |
NM_000030.3(AGXT):c.681-1G>A
|
SNV Germline |
Chr2:240875108 |
Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003468710 |
NM_000030.3(AGXT):c.139G>C (p.Gly47Arg)
|
SNV Germline |
Chr2:240869004 |
Likely pathogenic |
Primary hyperoxaluria, type I |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV003468719 |
NM_012203.2(GRHPR):c.422G>A (p.Trp141Ter)
|
SNV Unknown |
Chr9:37428501 |
Likely pathogenic |
Primary hyperoxaluria, type II |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV004576701 |
NM_012203.2(GRHPR):c.493+1G>A
|
SNV Unknown |
Chr9:37428573 |
Likely pathogenic |
Primary hyperoxaluria, type II |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV004576702 |