Total 18 pathogenic variants reported for Pilomatrixoma 
Variant Name Variant Type Variant Genomic Location Clinical Significance Phenotype Condition Review Status ClinGen Allele dbSNP ID Variation/condition record
NM_001048174.2(MUTYH):c.1103G>A (p.Gly368Asp) SNV
Germline
Chr1:45331556 Pathogenic/Likely pathogenic Endometrial cancer
Familial adenomatous polyposis 2
Hereditary cancer-predisposing syndrome
Condition: not provided
not specified
Carcinoma of colon
Neoplasm of stomach
Familial adenomatous polyposis 2
Small intestine carcinoid
Neoplasm of stomach
Pilomatrixoma
Familial adenomatous polyposis 2
Colorectal adenomatous polyposis, autosomal recessive, with pilomatricomas
Ovarian carcinoma
Colon cancer
Breast carcinoma
Familial colorectal cancer
MUTYH-related disorder
Criteria Provided
Multiple Submitters
No Conflicts
CA011561 rs_36053993

66 SubmittersRCV000005615RCV000005614RCV000115748RCV000079501RCV000121598RCV000144637RCV000477907RCV000493920RCV000515320RCV000501239RCV001262769RCV001580144RCV001574076RCV002051775RCV004528084

NM_001904.4(CTNNB1):c.98C>A (p.Ser33Tyr) SNV
Somatic
Chr3:41224610 Pathogenic/Likely pathogenic Carcinoma of colon
Pilomatrixoma
Carcinoma of esophagus
Medulloblastoma
Hepatocellular carcinoma
Endometrium neoplasm
Malignant neoplasm of body of uterus
Prostate adenocarcinoma
Gastric adenocarcinoma
Malignant melanoma of skin
Pancreatic adenocarcinoma
Transitional cell carcinoma of the bladder
Neoplasm of the large intestine
Lung adenocarcinoma
No Assertion Criteria Provided
CA127263 rs_121913400

2 SubmittersRCV000019138RCV000019139RCV000423917RCV000435233RCV000426112RCV000443472RCV000435972RCV000418289RCV000430278RCV000434171RCV000424968RCV000437025RCV000443834RCV000444481

NM_001904.4(CTNNB1):c.95A>G (p.Asp32Gly) SNV
Somatic
Chr3:41224607 Pathogenic/Likely pathogenic Pilomatrixoma
Condition: not provided
Medulloblastoma
Malignant neoplasm of body of uterus
Malignant melanoma of skin
Prostate adenocarcinoma
Neoplasm of uterine cervix
Transitional cell carcinoma of the bladder
Melanoma
Hepatocellular carcinoma
Gastric adenocarcinoma
No Assertion Criteria Provided
CA127265 rs_121913396

3 SubmittersRCV000019140RCV000087199RCV000427896RCV000435333RCV000417687RCV000433199RCV000427454RCV000425010RCV000443883RCV000437703RCV000443060

NM_001904.4(CTNNB1):c.110C>G (p.Ser37Cys) SNV
Somatic
Chr3:41224622 Pathogenic/Likely pathogenic Neoplasm of ovary
Pilomatrixoma
Condition: not provided
Malignant neoplasm of body of uterus
Lung adenocarcinoma
Prostate adenocarcinoma
Transitional cell carcinoma of the bladder
Hepatocellular carcinoma
Carcinoma of esophagus
Medulloblastoma
Gastric adenocarcinoma
Neoplasm of uterine cervix
No Assertion Criteria Provided
CA127267 rs_121913403

3 SubmittersRCV000019141RCV000030945RCV000087195RCV000421574RCV000432924RCV000441696RCV000445258RCV000423597RCV000422240RCV000431366RCV000438791RCV000430788

NM_001904.4(CTNNB1):c.94G>T (p.Asp32Tyr) SNV
Somatic
Chr3:41224606 Pathogenic/Likely pathogenic; other Hepatoblastoma
Pilomatrixoma
Neoplasm of uterine cervix
Gastric adenocarcinoma
Malignant neoplasm of body of uterus
Craniopharyngioma
Malignant melanoma of skin
Hepatocellular carcinoma
Transitional cell carcinoma of the bladder
Medulloblastoma
Prostate adenocarcinoma
No Assertion Criteria Provided
CA127271 rs_28931588

3 SubmittersRCV000019144RCV000128842RCV000420526RCV000418154RCV000419388RCV000426162RCV000426839RCV000430774RCV000438170RCV000437074RCV000441036

NM_001904.4(CTNNB1):c.98C>T (p.Ser33Phe) SNV
Somatic
Chr3:41224610 Pathogenic/Likely pathogenic; other Pilomatrixoma
Medulloblastoma
Neoplasm of the large intestine
Hepatocellular carcinoma
Gastric adenocarcinoma
Transitional cell carcinoma of the bladder
Malignant neoplasm of body of uterus
ADRENAL CORTICAL NEOPLASM
Prostate adenocarcinoma
Malignant melanoma of skin
Pancreatic adenocarcinoma
Lung adenocarcinoma
Carcinoma of esophagus
Malignant tumor of urinary bladder
No Assertion Criteria Provided
CA127275 rs_121913400

4 SubmittersRCV000019147RCV000019148RCV000418596RCV000438845RCV000439964RCV000428161RCV000420986RCV000505658RCV000443180RCV000421635RCV000423964RCV000434049RCV000437352RCV003332083

NM_001904.4(CTNNB1):c.101G>A (p.Gly34Glu) SNV
Somatic
Chr3:41224613 Pathogenic/Likely pathogenic; other Pilomatrixoma
Medulloblastoma
Squamous cell carcinoma of the head and neck
Adrenal cortex carcinoma
Malignant neoplasm of body of uterus
Malignant melanoma of skin
Hepatocellular carcinoma
Lung adenocarcinoma
Gastric adenocarcinoma
Neoplasm of ovary
No Assertion Criteria Provided
CA127277 rs_28931589

3 SubmittersRCV000019149RCV000443977RCV000422250RCV000432939RCV000433938RCV000434538RCV000443851RCV000439589RCV000423249RCV000426491

NM_001904.4(CTNNB1):c.110C>T (p.Ser37Phe) SNV
Somatic
Chr3:41224622 Pathogenic/Likely pathogenic Pilomatrixoma
Neoplasm of uterine cervix
Prostate adenocarcinoma
Gastric adenocarcinoma
Hepatocellular carcinoma
Neoplasm of ovary
Transitional cell carcinoma of the bladder
Malignant neoplasm of body of uterus
Medulloblastoma
Melanoma
Carcinoma of esophagus
Lung adenocarcinoma
No Assertion Criteria Provided
CA127279 rs_121913403

2 SubmittersRCV000019151RCV000427490RCV000433883RCV000444520RCV000426489RCV000420061RCV000437726RCV000425340RCV000428583RCV000442576RCV000436738RCV000445320

NM_001904.4(CTNNB1):c.122C>T (p.Thr41Ile) SNV
Somatic
Chr3:41224634 Likely pathogenic Pilomatrixoma
Prostate adenocarcinoma
Pancreatic adenocarcinoma
Malignant neoplasm of body of uterus
Neoplasm of the large intestine
Lung adenocarcinoma
Hepatocellular carcinoma
Adrenal cortex carcinoma
Malignant melanoma of skin
Desmoid disease, hereditary
Criteria Provided
Single Submitter
CA127281 rs_121913413

3 SubmittersRCV000019152RCV000422057RCV000427656RCV000426659RCV000432291RCV000436836RCV000442963RCV000442251RCV000443038RCV004562216

NM_001048174.2(MUTYH):c.13C>T (p.Arg5Ter) SNV
Germline
Chr1:45334493 Pathogenic/Likely pathogenic Condition: not provided
Carcinoma of colon
Familial adenomatous polyposis 2
Hereditary cancer-predisposing syndrome
Familial adenomatous polyposis 2
Pilomatrixoma
Neoplasm of stomach
Gastric cancer
Criteria Provided
Multiple Submitters
No Conflicts
CA013854 rs_587780088

11 SubmittersRCV000115767RCV000144639RCV000206117RCV000447652RCV000763343RCV003162540

NM_001048174.2(MUTYH):c.488G>A (p.Arg163Gln) SNV
Germline
Chr1:45332767 Conflicting classifications of pathogenicity Hereditary cancer-predisposing syndrome
Familial adenomatous polyposis 2
Condition: not provided
Pilomatrixoma
Familial adenomatous polyposis 2
Neoplasm of stomach
not specified
Criteria Provided
Conflicting Classifications
CA013903 rs_369677603

12 SubmittersRCV000115768RCV000168022RCV000212702RCV000765176RCV001192928

NM_001048174.2(MUTYH):c.901G>A (p.Val301Met) SNV
Germline
Chr1:45332035 Conflicting classifications of pathogenicity not specified
Hereditary cancer-predisposing syndrome
Familial adenomatous polyposis 2
Condition: not provided
Familial adenomatous polyposis 2
Pilomatrixoma
Neoplasm of stomach
Criteria Provided
Conflicting Classifications
CA014772 rs_147718169

18 SubmittersRCV000121592RCV000129011RCV000205715RCV000656910RCV000515294

NM_001048174.2(MUTYH):c.1171G>A (p.Ala391Thr) SNV
Germline
Chr1:45331488 Conflicting classifications of pathogenicity Familial adenomatous polyposis 2
Hereditary cancer-predisposing syndrome
Neoplasm of stomach
Pilomatrixoma
Familial adenomatous polyposis 2
Condition: not provided
not specified
Criteria Provided
Conflicting Classifications
CA012424 rs_587780744

11 SubmittersRCV000123142RCV000130485RCV000515285RCV000590647RCV001175350

NM_001048174.2(MUTYH):c.652G>T (p.Val218Phe) SNV
Germline
Chr1:45332443 Conflicting classifications of pathogenicity Familial adenomatous polyposis 2
Hereditary cancer-predisposing syndrome
Condition: not provided
Pilomatrixoma
Criteria Provided
Conflicting Classifications
CA014236 rs_587780749

13 SubmittersRCV000123154RCV000131615RCV000212707RCV001292933

NM_001048174.2(MUTYH):c.650G>A (p.Arg217His) SNV
Germline
Chr1:45332445 Pathogenic/Likely pathogenic Hereditary cancer-predisposing syndrome
Familial adenomatous polyposis 2
Condition: not provided
Neoplasm of stomach
Familial adenomatous polyposis 2
Pilomatrixoma
Breast carcinoma
Carcinoma of colon
Diffuse midline glioma, H3 K27-altered
MUTYH-related disorder
Criteria Provided
Multiple Submitters
No Conflicts
CA014226 rs_140342925

27 SubmittersRCV000129105RCV000196778RCV000212706RCV000515198RCV001262379RCV001353906RCV003313780RCV004532545

NM_001048174.2(MUTYH):c.460C>T (p.Arg154Cys) SNV
Germline
Chr1:45332795 Conflicting classifications of pathogenicity Hereditary cancer-predisposing syndrome
Familial adenomatous polyposis 2
Condition: not provided
Ovarian cancer
Pilomatrixoma
Criteria Provided
Conflicting Classifications
CA013785 rs_747993448

18 SubmittersRCV000166998RCV000229525RCV000236750RCV003153454RCV002272151

NM_001048174.2(MUTYH):c.305-1G>C SNV
Germline
Chr1:45333171 Pathogenic Hereditary cancer-predisposing syndrome
Familial adenomatous polyposis 2
Familial adenomatous polyposis 2
Pilomatrixoma
Neoplasm of stomach
Condition: not provided
Carcinoma of colon
Criteria Provided
Multiple Submitters
No Conflicts
CA10577740 rs_372267274

14 SubmittersRCV000221410RCV000230931RCV000763342RCV000478994RCV001353991

NM_001904.4(CTNNB1):c.100G>A (p.Gly34Arg) SNV
Somatic
Chr3:41224612 Pathogenic/Likely pathogenic Craniopharyngioma
Pilomatrixoma
Malignant tumor of urinary bladder
No Assertion Criteria Provided
CA16602685 rs_121913399

2 SubmittersRCV000426895RCV000444074RCV003332169