Total 151 pathogenic variants reported for Hereditary antithrombin deficiency 
Variant Name Variant Type Variant Genomic Location Clinical Significance Phenotype Condition Review Status ClinGen Allele dbSNP ID Variation/condition record
NM_000488.4(SERPINC1):c.1306G>A (p.Ala436Thr) SNV
Germline
Chr1:173903978 Likely pathogenic Hereditary antithrombin deficiency Reviewed By Expert Panel
CA210746 rs_121909546

3 SubmittersRCV000019619

NM_000488.4(SERPINC1):c.235C>T (p.Arg79Cys) SNV
Germline
Chr1:173914726 Pathogenic Hereditary antithrombin deficiency
Condition: not provided
Reviewed By Expert Panel
CA210748 rs_121909547

7 SubmittersRCV000019620RCV004791230

NM_000488.4(SERPINC1):c.1246G>C (p.Ala416Pro) SNV
Germline
Chr1:173904038 Pathogenic Hereditary antithrombin deficiency
Condition: not provided
Reviewed By Expert Panel
CA210750 rs_121909548

4 SubmittersRCV000019623RCV003886364

NM_000488.4(SERPINC1):c.1274G>C (p.Arg425Pro) SNV
Germline
Chr1:173904010 Likely pathogenic Hereditary antithrombin deficiency Reviewed By Expert Panel
CA210752 rs_121909549

2 SubmittersRCV000019625

NM_000488.4(SERPINC1):c.1277C>T (p.Ser426Leu) SNV
Germline
Chr1:173904007 Pathogenic Hereditary antithrombin deficiency Reviewed By Expert Panel
CA210754 rs_121909550

3 SubmittersRCV000019626

NM_000488.4(SERPINC1):c.218C>T (p.Pro73Leu) SNV
Germline
Chr1:173914743 Pathogenic Hereditary antithrombin deficiency
Condition: not provided
Reviewed By Expert Panel
CA210756 rs_121909551

18 SubmittersRCV000019627RCV001090508

NM_000488.4(SERPINC1):c.89T>A (p.Val30Glu) SNV
Germline
Chr1:173914872 Pathogenic Hereditary antithrombin deficiency
Condition: not provided
Thromboembolism
Deep venous thrombosis
Reviewed By Expert Panel
CA325653 rs_2227624

10 SubmittersRCV000019628RCV000857628RCV000852239RCV000852240

NM_000488.4(SERPINC1):c.236G>A (p.Arg79His) SNV
Germline
Chr1:173914725 Pathogenic Hereditary antithrombin deficiency
Condition: not provided
SERPINC1-related disorder
Reviewed By Expert Panel
CA210758 rs_121909552

15 SubmittersRCV000019630RCV002054451RCV004754265

NM_000488.4(SERPINC1):c.235C>A (p.Arg79Ser) SNV
Germline
Chr1:173914726 Likely pathogenic Hereditary antithrombin deficiency Reviewed By Expert Panel
CA210760 rs_121909547

2 SubmittersRCV000019631

NM_000488.4(SERPINC1):c.1273C>T (p.Arg425Cys) SNV
Germline
Chr1:173904011 Pathogenic Hereditary antithrombin deficiency Reviewed By Expert Panel
CA210762 rs_121909554

4 SubmittersRCV000019632

NM_000488.4(SERPINC1):c.1316C>T (p.Pro439Leu) SNV
Germline
Chr1:173903968 Likely pathogenic Hereditary antithrombin deficiency Reviewed By Expert Panel
CA210764 rs_121909555

2 SubmittersRCV000019633

NM_000488.4(SERPINC1):c.1274G>A (p.Arg425His) SNV
Germline
Chr1:173904010 Pathogenic Hereditary antithrombin deficiency
Condition: not provided
Reviewed By Expert Panel
CA210766 rs_121909549

4 SubmittersRCV000019635RCV005434608

NM_000488.4(SERPINC1):c.1240G>A (p.Ala414Thr) SNV
Germline
Chr1:173904044 Likely pathogenic Hereditary antithrombin deficiency
Condition: not provided
Reviewed By Expert Panel
CA210768 rs_121909557

4 SubmittersRCV000019636RCV004791231

NM_000488.4(SERPINC1):c.116T>A (p.Ile39Asn) SNV
Germline
Chr1:173914845 Pathogenic Hereditary antithrombin deficiency No Assertion Criteria Provided
CA210770 rs_121909558

1 SubmittersRCV000019637

NM_000488.4(SERPINC1):c.166C>T (p.Arg56Cys) SNV
Germline
Chr1:173914795 Likely pathogenic Hereditary antithrombin deficiency
Condition: not provided
Criteria Provided
Multiple Submitters
No Conflicts
CA210772 rs_28929469

3 SubmittersRCV000019638RCV000420779

NM_000488.4(SERPINC1):c.1246G>T (p.Ala416Ser) SNV
Germline
Chr1:173904038 Conflicting classifications of pathogenicity Hereditary antithrombin deficiency
not specified
Condition: not provided
Thrombocytopenia
Abnormal bleeding
Criteria Provided
Conflicting Classifications
CA211880 rs_121909548

10 SubmittersRCV000019639RCV000249153RCV000857698RCV001270536

NM_000488.4(SERPINC1):c.481C>T (p.Arg161Ter) SNV
Germline
Chr1:173911942 Pathogenic Hereditary antithrombin deficiency
Condition: not provided
Criteria Provided
Multiple Submitters
No Conflicts
CA210776 rs_121909562

4 SubmittersRCV000019645RCV001588819

NM_000488.4(SERPINC1):c.482G>A (p.Arg161Gln) SNV
Germline
Chr1:173911941 Pathogenic Hereditary antithrombin deficiency Reviewed By Expert Panel
CA210779 rs_121909563

4 SubmittersRCV000019646

NM_000488.4(SERPINC1):c.1382C>T (p.Pro461Leu) SNV
Germline
Chr1:173903902 Pathogenic Hereditary antithrombin deficiency No Assertion Criteria Provided
CA210781 rs_121909564

1 SubmittersRCV000019647

NM_000488.4(SERPINC1):c.391C>T (p.Leu131Phe) SNV
Germline
Chr1:173914570 Pathogenic Hereditary antithrombin deficiency
Deep venous thrombosis
Condition: not provided
Reviewed By Expert Panel
CA210787 rs_121909567

10 SubmittersRCV000019650RCV000851769RCV001543498

NM_000488.4(SERPINC1):c.442T>C (p.Ser148Pro) SNV
Germline
Chr1:173911981 Pathogenic/Likely pathogenic Hereditary antithrombin deficiency Criteria Provided
Multiple Submitters
No Conflicts
CA210791 rs_121909569

4 SubmittersRCV000019655

NM_000488.4(SERPINC1):c.68T>C (p.Leu23Pro) SNV
Germline
Chr1:173914893 Pathogenic Hereditary antithrombin deficiency No Assertion Criteria Provided
CA210793 rs_387906575

1 SubmittersRCV000019656

NM_000488.4(SERPINC1):c.500A>C (p.Asn167Thr) SNV
Germline
Chr1:173911923 Pathogenic Hereditary antithrombin deficiency No Assertion Criteria Provided
CA210795 rs_121909570

1 SubmittersRCV000019657

NM_000488.4(SERPINC1):c.655A>G (p.Asn219Asp) SNV
Germline
Chr1:173910861 Pathogenic Hereditary antithrombin deficiency Reviewed By Expert Panel
CA210798 rs_121909571

4 SubmittersRCV000019658

NM_000488.4(SERPINC1):c.667T>C (p.Ser223Pro) SNV
Germline
Chr1:173910849 Pathogenic Hereditary antithrombin deficiency No Assertion Criteria Provided
CA210800 rs_121909572

1 SubmittersRCV000019659

NM_000488.4(SERPINC1):c.379T>C (p.Cys127Arg) SNV
Germline
Chr1:173914582 Pathogenic Hereditary antithrombin deficiency No Assertion Criteria Provided
CA210802 rs_121909573

1 SubmittersRCV000019660

NM_000488.4(SERPINC1):c.1016G>A (p.Trp339Ter) SNV
Germline
Chr1:173909689 Pathogenic Tuberous sclerosis 2
Hereditary antithrombin deficiency
Criteria Provided
Single Submitter
CA150667 rs_483352856

2 SubmittersRCV000087276RCV001857426

NM_000488.4(SERPINC1):c.641C>A (p.Ser214Tyr) SNV
Germline
Chr1:173910875 Likely pathogenic Tuberous sclerosis 2
Hereditary antithrombin deficiency
Criteria Provided
Single Submitter
CA150697 rs_483352854

2 SubmittersRCV000087290RCV002514538

NM_000488.4(SERPINC1):c.1154-14G>A SNV
Germline
Chr1:173907528 Pathogenic Hereditary antithrombin deficiency Reviewed By Expert Panel
CA16609956 rs_542881762

4 SubmittersRCV000456535

NM_000488.4(SERPINC1):c.805G>A (p.Glu269Lys) SNV
Germline
Chr1:173909900 Conflicting classifications of pathogenicity Hereditary antithrombin deficiency
Condition: not provided
Criteria Provided
Conflicting Classifications
CA1251332 rs_758087836

3 SubmittersRCV000471250RCV003480641

NM_000488.4(SERPINC1):c.1315C>A (p.Pro439Thr) SNV
Germline
Chr1:173903969 Pathogenic Abnormal thrombosis
Hereditary antithrombin deficiency
Reviewed By Expert Panel
CA343772370 rs_1487411568

3 SubmittersRCV000852017RCV003330321

NM_000488.4(SERPINC1):c.953C>T (p.Pro318Leu) SNV
Germline
Chr1:173909752 Pathogenic Hereditary antithrombin deficiency
Condition: not provided
Reviewed By Expert Panel
CA343774114 rs_1460568494

4 SubmittersRCV000851915RCV004792443

NM_000488.4(SERPINC1):c.449A>C (p.Gln150Pro) SNV
Germline
Chr1:173911974 Likely pathogenic Hereditary antithrombin deficiency
Condition: not provided
SERPINC1-related disorder
Reviewed By Expert Panel
CA1251409 rs_765445413

5 SubmittersRCV000810125RCV002284206RCV004754569

NM_000488.4(SERPINC1):c.1153+5G>T SNV
Germline
Chr1:173909547 Likely pathogenic Hereditary antithrombin deficiency Criteria Provided
Single Submitter
CA915943668 rs_1572088348

1 SubmittersRCV000799445

NM_000488.4(SERPINC1):c.624+1G>A SNV
Germline
Chr1:173911798 Likely pathogenic Hereditary antithrombin deficiency
Condition: not provided
Reviewed By Expert Panel
CA343776041 rs_1572090079

3 SubmittersRCV000856668RCV004818065

NM_000488.4(SERPINC1):c.1157T>C (p.Ile386Thr) SNV
Germline
Chr1:173907511 Pathogenic Hereditary antithrombin deficiency Reviewed By Expert Panel
CA343772853 rs_1449772752

4 SubmittersRCV001070670

NM_000488.4(SERPINC1):c.341G>A (p.Ser114Asn) SNV
Germline
Chr1:173914620 Pathogenic Hereditary antithrombin deficiency Criteria Provided
Single Submitter
CA343777442 rs_1657909645

1 SubmittersRCV001045955

NM_000488.4(SERPINC1):c.1315C>G (p.Pro439Ala) SNV
Germline
Chr1:173903969 Pathogenic/Likely pathogenic Hereditary antithrombin deficiency Criteria Provided
Multiple Submitters
No Conflicts
CA343772367 rs_1487411568

2 SubmittersRCV001231167

NM_000488.4(SERPINC1):c.1057C>T (p.Pro353Ser) SNV
Germline
Chr1:173909648 Likely pathogenic Hereditary antithrombin deficiency Criteria Provided
Single Submitter
CA343773667 rs_2102782517

1 SubmittersRCV001377779

NM_000488.4(SERPINC1):c.1190C>G (p.Ser397Ter) SNV
Germline
Chr1:173907478 Pathogenic Hereditary antithrombin deficiency Criteria Provided
Single Submitter
CA343772780 rs_2102778910

1 SubmittersRCV001380042

NM_000488.4(SERPINC1):c.439A>G (p.Thr147Ala) SNV
Germline
Chr1:173911984 Likely pathogenic Hereditary antithrombin deficiency
SERPINC1-related disorder
Reviewed By Expert Panel
CA1251411 rs_2227606

3 SubmittersRCV001523260RCV003956212

NM_000488.4(SERPINC1):c.133C>T (p.Arg45Trp) SNV
Germline
Chr1:173914828 Pathogenic/Likely pathogenic Hereditary antithrombin deficiency Criteria Provided
Multiple Submitters
No Conflicts
CA1251463 rs_768704768

3 SubmittersRCV001801304

NM_000488.4(SERPINC1):c.819G>C (p.Lys273Asn) SNV
Unknown
Chr1:173909886 Likely pathogenic Hereditary antithrombin deficiency Criteria Provided
Single Submitter
CA343774672 rs_2102783199

1 SubmittersRCV001801312

NM_000488.4(SERPINC1):c.436A>G (p.Lys146Glu) SNV
Unknown
Chr1:173911987 Pathogenic Hereditary antithrombin deficiency Criteria Provided
Single Submitter
CA343776822 rs_1170430756

1 SubmittersRCV001801322

NM_000488.4(SERPINC1):c.1277C>G (p.Ser426Trp) SNV
Germline
Chr1:173904007 Likely pathogenic Hereditary antithrombin deficiency Criteria Provided
Single Submitter
CA343772578 rs_121909550

1 SubmittersRCV001908898

NM_000488.4(SERPINC1):c.607C>T (p.Gln203Ter) SNV
Germline
Chr1:173911816 Pathogenic Hereditary antithrombin deficiency Criteria Provided
Single Submitter
CA343776147 rs_2102785788

1 SubmittersRCV001951154

NM_000488.4(SERPINC1):c.685C>T (p.Arg229Ter) SNV
Germline
Chr1:173910831 Pathogenic/Likely pathogenic Hereditary antithrombin deficiency
Condition: not provided
Criteria Provided
Multiple Submitters
No Conflicts
CA343775544 rs_1657743081

4 SubmittersRCV001958585RCV004793654

NM_000488.4(SERPINC1):c.381T>A (p.Cys127Ter) SNV
Germline
Chr1:173914580 Pathogenic Hereditary antithrombin deficiency Criteria Provided
Single Submitter
CA343777287 rs_2102789590

1 SubmittersRCV001984533

NM_000488.4(SERPINC1):c.116T>C (p.Ile39Thr) SNV
Unknown
Chr1:173914845 Likely pathogenic Hereditary antithrombin deficiency Criteria Provided
Single Submitter
CA343778339 rs_121909558

1 SubmittersRCV002074468

NM_000488.4(SERPINC1):c.1219-2A>G SNV
Unknown
Chr1:173904067 Pathogenic Hereditary antithrombin deficiency Criteria Provided
Single Submitter
CA343772709 rs_2102773374

1 SubmittersRCV002074473

NM_000488.4(SERPINC1):c.951G>T (p.Leu317Phe) SNV
Unknown
Chr1:173909754 Likely pathogenic Hereditary antithrombin deficiency No Assertion Criteria Provided
CA343774127 rs_1468108124

1 SubmittersRCV002245317

NM_000488.4(SERPINC1):c.851T>G (p.Met284Arg) SNV
Unknown
Chr1:173909854 Likely pathogenic Hereditary antithrombin deficiency No Assertion Criteria Provided
CA343774540 rs_1572088737

1 SubmittersRCV002245318

NM_000488.4(SERPINC1):c.473T>C (p.Leu158Pro) SNV
Unknown
Chr1:173911950 Likely pathogenic Hereditary antithrombin deficiency No Assertion Criteria Provided
CA343776693 rs_2102786101

1 SubmittersRCV002245320

NM_000488.4(SERPINC1):c.382A>T (p.Asn128Tyr) SNV
Unknown
Chr1:173914579 Likely pathogenic Hereditary antithrombin deficiency No Assertion Criteria Provided
CA343777281 rs_1657908048

1 SubmittersRCV002245321

NM_000488.4(SERPINC1):c.679G>T (p.Glu227Ter) SNV
Germline
Chr1:173910837 Likely pathogenic Hereditary antithrombin deficiency Criteria Provided
Single Submitter
CA343775565 rs_1572089542

1 SubmittersRCV002285196

NM_000488.4(SERPINC1):c.1366G>C (p.Gly456Arg) SNV
Germline
Chr1:173903918 Pathogenic Hereditary antithrombin deficiency Criteria Provided
Multiple Submitters
No Conflicts
CA343772104 rs_2526542281

2 SubmittersRCV002664191

NM_000488.4(SERPINC1):c.1302C>A (p.Phe434Leu) SNV
Germline
Chr1:173903982 Likely pathogenic Hereditary antithrombin deficiency Criteria Provided
Single Submitter
CA343772447 rs_2526542785

1 SubmittersRCV002648222

NM_000488.4(SERPINC1):c.243G>A (p.Trp81Ter) SNV
Germline
Chr1:173914718 Pathogenic Hereditary antithrombin deficiency Criteria Provided
Single Submitter
CA343777815 rs_2526595268

1 SubmittersRCV002572012

NM_000488.4(SERPINC1):c.490C>T (p.Arg164Ter) SNV
Germline
Chr1:173911933 Pathogenic/Likely pathogenic Hereditary antithrombin deficiency
Condition: not provided
Criteria Provided
Multiple Submitters
No Conflicts
CA32781302 rs_199469504

3 SubmittersRCV003126293RCV004790480

NM_000488.4(SERPINC1):c.778A>T (p.Lys260Ter) SNV
Germline
Chr1:173909927 Pathogenic Hereditary antithrombin deficiency Reviewed By Expert Panel
CA343774795 rs_2526572347

1 SubmittersRCV003330340

NM_000488.4(SERPINC1):c.614T>C (p.Leu205Pro) SNV
Unknown
Chr1:173911809 Likely pathogenic Hereditary antithrombin deficiency Criteria Provided
Single Submitter
CA343776107 rs_2526581062

1 SubmittersRCV003484563

NM_000488.4(SERPINC1):c.1219-1G>A SNV
Unknown
Chr1:173904066 Likely pathogenic Hereditary antithrombin deficiency Criteria Provided
Single Submitter
CA343772707 rs_2526543505

1 SubmittersRCV003484574

NM_000488.4(SERPINC1):c.1358T>C (p.Ile453Thr) SNV
Unknown
Chr1:173903926 Pathogenic Hereditary antithrombin deficiency Criteria Provided
Single Submitter
CA343772148 rs_2526542341

1 SubmittersRCV003484578

NM_000488.4(SERPINC1):c.272C>T (p.Ala91Val) SNV
Germline
Chr1:173914689 Likely pathogenic Hereditary antithrombin deficiency Criteria Provided
Single Submitter
CA343777700 rs_2526594923

1 SubmittersRCV003526964

NM_000488.4(SERPINC1):c.1311C>G (p.Asn437Lys) SNV
Germline
Chr1:173903973 Pathogenic Hereditary antithrombin deficiency Reviewed By Expert Panel
CA343772391 rs_1301351856

2 SubmittersRCV003527184

NM_000488.4(SERPINC1):c.1171C>T (p.Arg391Ter) SNV
Germline
Chr1:173907497 Pathogenic Hereditary antithrombin deficiency Reviewed By Expert Panel
CA343772824 rs_2526559702

2 SubmittersRCV003527185

NM_000488.4(SERPINC1):c.1058C>T (p.Pro353Leu) SNV
Germline
Chr1:173909647 Likely pathogenic Hereditary antithrombin deficiency Criteria Provided
Single Submitter
CA343773664 rs_2526569822

1 SubmittersRCV003527186

NM_000488.4(SERPINC1):c.1009C>T (p.Gln337Ter) SNV
Germline
Chr1:173909696 Pathogenic Hereditary antithrombin deficiency Criteria Provided
Single Submitter
CA343773887 rs_2526570241

1 SubmittersRCV003527187

NM_000488.4(SERPINC1):c.580A>C (p.Ser194Arg) SNV
Germline
Chr1:173911843 Likely pathogenic Hereditary antithrombin deficiency Criteria Provided
Single Submitter
CA343776281 rs_2526581512

1 SubmittersRCV003527189

NM_000488.4(SERPINC1):c.452T>A (p.Ile151Asn) SNV
Germline
Chr1:173911971 Likely pathogenic Hereditary antithrombin deficiency Criteria Provided
Single Submitter
CA343776778 rs_2526582277

1 SubmittersRCV003527190

NM_000488.4(SERPINC1):c.409-1G>T SNV
Germline
Chr1:173912015 Pathogenic Hereditary antithrombin deficiency Criteria Provided
Single Submitter
CA343776886 rs_2526582621

1 SubmittersRCV003527191

NM_000488.4(SERPINC1):c.409-1G>C SNV
Germline
Chr1:173912015 Pathogenic Hereditary antithrombin deficiency Criteria Provided
Single Submitter
CA343776887 rs_2526582621

1 SubmittersRCV003527192

NM_000488.4(SERPINC1):c.41+5G>A SNV
Germline
Chr1:173917214 Likely pathogenic Hereditary antithrombin deficiency Criteria Provided
Single Submitter
CA2586964455 rs_2526612663

1 SubmittersRCV003527193

NC_000001.11:g.173917430G>C SNV
Germline
Chr1:173917430 Likely pathogenic Hereditary antithrombin deficiency Criteria Provided
Single Submitter
CA1009280670 rs_1658038847

1 SubmittersRCV003527194

NM_000488.4(SERPINC1):c.205G>T (p.Glu69Ter) SNV
Germline
Chr1:173914756 Pathogenic Hereditary antithrombin deficiency Criteria Provided
Single Submitter
CA343778005 rs_2526595697

1 SubmittersRCV003639540

NM_000488.4(SERPINC1):c.374G>A (p.Gly125Asp) SNV
Germline
Chr1:173914587 Pathogenic Hereditary antithrombin deficiency Criteria Provided
Single Submitter
CA343777309 rs_2526594003

1 SubmittersRCV003639154

NM_000488.4(SERPINC1):c.679G>A (p.Glu227Lys) SNV
Germline
Chr1:173910837 Likely pathogenic Hereditary antithrombin deficiency Criteria Provided
Single Submitter
CA343775569 rs_1572089542

1 SubmittersRCV003877717

NM_000488.4(SERPINC1):c.749C>T (p.Thr250Ile) SNV
Germline
Chr1:173910767 Likely pathogenic Hereditary antithrombin deficiency Criteria Provided
Single Submitter
CA1251351 rs_144084678

1 SubmittersRCV003876451

NM_000488.4(SERPINC1):c.851T>C (p.Met284Thr) SNV
Germline
Chr1:173909854 Likely pathogenic Hereditary antithrombin deficiency Criteria Provided
Single Submitter
CA343774542 rs_1572088737

1 SubmittersRCV003872232

NM_000488.4(SERPINC1):c.857A>C (p.Gln286Pro) SNV
Germline
Chr1:173909848 Pathogenic Hereditary antithrombin deficiency Reviewed By Expert Panel
rs_2526571722

1 SubmittersRCV004577660

NM_000488.4(SERPINC1):c.41+3A>T SNV
Germline
Chr1:173917216 Likely pathogenic Hereditary antithrombin deficiency Criteria Provided
Single Submitter

1 SubmittersRCV005006768

NM_000488.4(SERPINC1):c.569A>G (p.Tyr190Cys) SNV
Unknown
Chr1:173911854 Likely pathogenic Hereditary antithrombin deficiency Criteria Provided
Single Submitter

1 SubmittersRCV005002125

NM_000488.4(SERPINC1):c.763-1G>C SNV
Germline
Chr1:173909943 Pathogenic Hereditary antithrombin deficiency Criteria Provided
Single Submitter

1 SubmittersRCV005107431

NM_000488.4(SERPINC1):c.562G>T (p.Glu188Ter) SNV
Germline
Chr1:173911861 Pathogenic Hereditary antithrombin deficiency Criteria Provided
Single Submitter

1 SubmittersRCV005124500

NM_000488.4(SERPINC1):c.1322T>C (p.Leu441Pro) SNV
Germline
Chr1:173903962 Pathogenic Hereditary antithrombin deficiency Criteria Provided
Single Submitter

1 SubmittersRCV005198065

NM_000488.4(SERPINC1):c.1153+1G>A SNV
Germline
Chr1:173909551 Likely pathogenic Hereditary antithrombin deficiency Criteria Provided
Single Submitter

1 SubmittersRCV005198066

NM_000488.4(SERPINC1):c.536T>G (p.Phe179Cys) SNV
Germline
Chr1:173911887 Likely pathogenic Hereditary antithrombin deficiency Criteria Provided
Single Submitter

1 SubmittersRCV005198068