Total 9 pathogenic variants reported for Ependymoma 
Variant Name Variant Type Variant Genomic Location Clinical Significance Phenotype Condition Review Status ClinGen Allele dbSNP ID Variation/condition record
NM_001048174.2(MUTYH):c.1103G>A (p.Gly368Asp) SNV
Germline
Chr1:45331556 Pathogenic/Likely pathogenic Endometrial cancer
Familial adenomatous polyposis 2
Condition: not provided
not specified
Hereditary cancer-predisposing syndrome
Carcinoma of colon
Colorectal adenomatous polyposis, autosomal recessive, with pilomatricomas
Neoplasm of stomach
Familial adenomatous polyposis 2
Small intestine carcinoid
Pilomatrixoma
Neoplasm of stomach
Familial adenomatous polyposis 2
Ovarian carcinoma
Colon cancer
Breast carcinoma
Familial colorectal cancer
MUTYH-related disorder
Diffuse midline glioma, H3 K27-altered
Inherited polyposis and early onset colorectal cancer - germline testing
Gastric cancer
Familial adenomatous polyposis 2
Pleomorphic xanthoastrocytoma BRAF mutant
Infant-type hemispheric glioma
Pilocytic astrocytoma
Ependymoma
Criteria Provided
Multiple Submitters
No Conflicts
CA011561 rs_36053993

77 SubmittersRCV000005615RCV000005614RCV000079501RCV000121598RCV000115748RCV000144637RCV000501239RCV000477907RCV000493920RCV000515320RCV001262769RCV001580144RCV001574076RCV002051775RCV004528084RCV004785246RCV004808548RCV005016243RCV006451760RCV006451759RCV006451758RCV006451889

NM_006306.4(SMC1A):c.1487G>A (p.Arg496His) SNV
Germline/somatic
ChrX:53409120 Pathogenic Congenital muscular hypertrophy-cerebral syndrome
Condition: not provided
Posterior fossa group A ependymoma
Criteria Provided
Multiple Submitters
No Conflicts
CA255969 rs_122454123

7 SubmittersRCV000012441RCV001577833RCV006253465

NM_001111067.4(ACVR1):c.617G>A (p.Arg206His) SNV
Germline/somatic
Chr2:157774114 Pathogenic Progressive myositis ossificans
Condition: not provided
Inborn genetic diseases
Epicanthus
ACVR1-related disorder
Ependymoma
Diffuse pediatric-type high-grade glioma, H3-wildtype and IDH-wildtype
Diffuse midline glioma, H3 K27M-mutant
Criteria Provided
Multiple Submitters
No Conflicts
CA128036 rs_121912678

22 SubmittersRCV000019971RCV000422441RCV001267285RCV001823099RCV003904851RCV006253673RCV006253674RCV006253675

NM_001111067.4(ACVR1):c.983G>A (p.Gly328Glu) SNV
Germline/somatic
Chr2:157766004 Pathogenic/Likely pathogenic Progressive myositis ossificans
Inborn genetic diseases
Condition: not provided
Ependymoma
Diffuse midline glioma, H3 K27M-mutant
Criteria Provided
Multiple Submitters
No Conflicts
CA128482 rs_387906589

6 SubmittersRCV000022432RCV000624246RCV003556067RCV006253680RCV006253681

NM_000268.4(NF2):c.551G>A (p.Trp184Ter) SNV
Somatic
Chr22:29655628 Likely pathogenic Ependymoma No Assertion Criteria Provided
CA411142590 rs_1555993293

1 SubmittersRCV000577850

NM_000251.3(MSH2):c.482T>C (p.Val161Ala) SNV
Germline
Chr2:47410209 Conflicting classifications of pathogenicity Hereditary nonpolyposis colorectal neoplasms
Breast carcinoma
Ependymoma
Hereditary cancer-predisposing syndrome
Lynch syndrome 1
Criteria Provided
Conflicting Classifications
CA346730609 rs_63750126

6 SubmittersRCV000685129RCV001554318RCV002286419RCV002331318RCV003992370

NM_020975.6(RET):c.1202G>A (p.Ser401Asn) SNV
Germline
Chr10:43109169 Conflicting classifications of pathogenicity Ependymoma
Hereditary cancer-predisposing syndrome
Criteria Provided
Conflicting Classifications
CA376547774 rs_1564493414

2 SubmittersRCV000761047RCV004949893