Total 10 pathogenic variants reported for Congenital diaphragmatic hernia 
Variant Name Variant Type Variant Genomic Location Clinical Significance Phenotype Condition Review Status ClinGen Allele dbSNP ID Variation/condition record
NM_005257.6(GATA6):c.1366C>T (p.Arg456Cys) SNV
Germline
Chr18:22181516 Pathogenic Pancreatic hypoplasia-diabetes-congenital heart disease syndrome
Abnormal cardiovascular system morphology
Congenital diaphragmatic hernia
Condition: not provided
Criteria Provided
Multiple Submitters
No Conflicts
CA129029 rs_387906818

6 SubmittersRCV000023135RCV000191918RCV003236769

NM_000245.4(MET):c.2975C>T (p.Thr992Ile) SNV
Germline/somatic
Chr7:116771936 Conflicting classifications of pathogenicity Condition: not provided
not specified
Papillary renal cell carcinoma type 1
Congenital diaphragmatic hernia
Hereditary cancer-predisposing syndrome
Carcinoma
Neoplasm
Renal cell carcinoma
Classic Hodgkin lymphoma
MET-related disorder
Criteria Provided
Conflicting Classifications
CA160417 rs_56391007

27 SubmittersRCV000034529RCV000121340RCV000123120RCV000203290RCV000163261RCV000421063RCV000431770RCV001507182RCV002227927RCV003891465

NM_005257.6(GATA6):c.712G>T (p.Gly238Ter) SNV
Germline/somatic
Chr18:22171856 Pathogenic Pancreatic hypoplasia-diabetes-congenital heart disease syndrome
Congenital diaphragmatic hernia
Abnormal cardiovascular system morphology
Criteria Provided
Single Submitter
CA170737 rs_587777710

2 SubmittersRCV000144067RCV000191916

NM_181458.4(PAX3):c.944C>A (p.Thr315Lys) SNV
Germline
Chr2:222221236 Conflicting classifications of pathogenicity Congenital diaphragmatic hernia
not specified
Waardenburg syndrome
Craniofacial-deafness-hand syndrome
Waardenburg syndrome type 1
Condition: not provided
Criteria Provided
Conflicting Classifications
CA339658 rs_2234675

8 SubmittersRCV000203286RCV000213796RCV000293967RCV000348942RCV000626405RCV000992502

NM_001379081.2(FREM1):c.1394G>C (p.Gly465Ala) SNV
Germline
Chr9:14842660 Conflicting classifications of pathogenicity Congenital diaphragmatic hernia
Oculotrichoanal syndrome
not specified
Condition: not provided
Criteria Provided
Conflicting Classifications
CA339661 rs_41298151

5 SubmittersRCV000203291RCV000289080RCV000249912RCV002057046

NM_005032.7(PLS3):c.617C>T (p.Ala206Val) SNV
Germline
ChrX:115634915 Likely pathogenic Congenital diaphragmatic hernia
Hernia, anterior diaphragmatic
Criteria Provided
Single Submitter
rs_2147551760

2 SubmittersRCV001827472RCV003985024