A total 172 pathogenic variants reported in gene recombination activating 2 (RAG2)
| Variant Name |
Variant Type |
Variant Genomic Location |
Clinical Significance |
Phenotype Condition |
Review Status |
ClinGen Allele |
dbSNP ID |
Variation/condition record |
|
NM_000536.4(RAG2):c.1433G>A (p.Cys478Tyr)
|
SNV Germline |
Chr11:36592736 |
Conflicting classifications of pathogenicity |
Severe combined immunodeficiency, B cell-negative Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Recombinase activating gene 2 deficiency Inborn error of immunity Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas Histiocytic medullary reticulosis Histiocytic medullary reticulosis |
Criteria Provided Conflicting Classifications |
CA122849 |
rs_121918573 |
6 SubmittersRCV000014009RCV000681602RCV003460470RCV003764566RCV005049335RCV006638619 |
|
NM_000536.4(RAG2):c.686G>A (p.Arg229Gln)
|
SNV Germline |
Chr11:36593483 |
Pathogenic |
Severe combined immunodeficiency, B cell-negative Histiocytic medullary reticulosis Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Recombinase activating gene 2 deficiency Inborn error of immunity Histiocytic medullary reticulosis Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas Condition: not provided Combined immunodeficiency with skin granulomas Recombinase activating gene 2 deficiency Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas Histiocytic medullary reticulosis Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive |
Reviewed By Expert Panel |
CA122854 |
rs_121917894 |
10 SubmittersRCV000014010RCV000014011RCV000681586RCV001049147RCV001813982RCV003473086RCV003398499RCV005042039RCV005867750 |
|
NM_000536.4(RAG2):c.123C>G (p.Cys41Trp)
|
SNV Germline |
Chr11:36594046 |
Pathogenic/Likely pathogenic |
Histiocytic medullary reticulosis Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Recombinase activating gene 2 deficiency Inborn error of immunity Histiocytic medullary reticulosis Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas |
Criteria Provided Multiple Submitters No Conflicts |
CA122857 |
rs_121917895 |
3 SubmittersRCV000014012RCV000681574RCV001851843 |
|
NM_000536.4(RAG2):c.854T>G (p.Met285Arg)
|
SNV Germline |
Chr11:36593315 |
Likely pathogenic |
Histiocytic medullary reticulosis Recombinase activating gene 2 deficiency Inborn error of immunity Histiocytic medullary reticulosis Severe combined immunodeficiency disease |
Criteria Provided Multiple Submitters No Conflicts |
CA122859 |
rs_121917896 |
3 SubmittersRCV000014013RCV000681589RCV005237374 |
|
NM_000536.4(RAG2):c.283G>A (p.Gly95Arg)
|
SNV Germline |
Chr11:36593886 |
Likely pathogenic |
Histiocytic medullary reticulosis Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas Histiocytic medullary reticulosis Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas Combined immunodeficiency with skin granulomas Recombinase activating gene 2 deficiency Condition: not provided |
Reviewed By Expert Panel |
CA122861 |
rs_36001797 |
8 SubmittersRCV000014014RCV000671154RCV001043887RCV003473087RCV003398500RCV004700229 |
|
NM_000536.4(RAG2):c.115A>G (p.Arg39Gly)
|
SNV Germline |
Chr11:36594054 |
Pathogenic |
Severe combined immunodeficiency, B cell-negative Histiocytic medullary reticulosis Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Recombinase activating gene 2 deficiency Inborn error of immunity Recombinase activating gene 2 deficiency |
Reviewed By Expert Panel |
CA122867 |
rs_121917897 |
3 SubmittersRCV000014017RCV000014018RCV000681573RCV003991458 |
|
NM_000536.4(RAG2):c.230C>A (p.Thr77Asn)
|
SNV Germline |
Chr11:36593939 |
Likely pathogenic |
Combined immunodeficiency with skin granulomas Combined immunodeficiency with skin granulomas Recombinase activating gene 2 deficiency Inborn error of immunity Histiocytic medullary reticulosis |
Criteria Provided Multiple Submitters No Conflicts |
CA122870 |
rs_121918574 |
4 SubmittersRCV000014019RCV000681578RCV006638620 |
|
NM_000536.4(RAG2):c.1352G>C (p.Gly451Ala)
|
SNV Germline |
Chr11:36592817 |
Pathogenic |
Combined immunodeficiency with skin granulomas Condition: not provided Recombinase activating gene 2 deficiency Inborn error of immunity Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas Common variable immunodeficiency Severe combined immunodeficiency disease Recombinase activating gene 2 deficiency Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Histiocytic medullary reticulosis Combined immunodeficiency with skin granulomas Histiocytic medullary reticulosis |
Reviewed By Expert Panel |
CA122872 |
rs_121918575 |
13 SubmittersRCV000014020RCV000521152RCV000681597RCV000821298RCV001027616RCV001731284RCV003398501RCV005042040RCV006638621 |
|
NM_000536.4(RAG2):c.104G>C (p.Gly35Ala)
|
SNV Germline |
Chr11:36594065 |
Pathogenic |
Severe combined immunodeficiency disease Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Recombinase activating gene 2 deficiency Inborn error of immunity Atypical severe combined immunodeficiency due to complete RAG1/2 deficiency Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas RAG2-related disorder Condition: not provided Recombinase activating gene 2 deficiency Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Histiocytic medullary reticulosis Histiocytic medullary reticulosis |
Reviewed By Expert Panel |
CA214209 |
rs_148508754 |
11 SubmittersRCV000030395RCV000819784RCV000681571RCV003137544RCV003473149RCV004755751RCV005229834RCV004765309RCV005042098RCV006638717 |
|
NM_000536.4(RAG2):c.1247G>T (p.Trp416Leu)
|
SNV Germline |
Chr11:36592922 |
Likely pathogenic |
Histiocytic medullary reticulosis Recombinase activating gene 2 deficiency Inborn error of immunity Histiocytic medullary reticulosis Condition: not provided Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive RAG2-related disorder Recombinase activating gene 2 deficiency Combined immunodeficiency with skin granulomas |
Reviewed By Expert Panel |
CA214212 |
rs_193922572 |
9 SubmittersRCV000030396RCV000681591RCV000788782RCV001389165RCV003407371RCV003991463RCV003473150 |
|
NM_000536.4(RAG2):c.1309G>A (p.Glu437Lys)
|
SNV Germline |
Chr11:36592860 |
Likely pathogenic |
not specified Condition: not provided Recombinase activating gene 2 deficiency Inborn error of immunity Atypical severe combined immunodeficiency due to complete RAG1/2 deficiency Combined immunodeficiency with skin granulomas Recombinase activating gene 2 deficiency Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Histiocytic medullary reticulosis Histiocytic medullary reticulosis |
Reviewed By Expert Panel |
CA214215 |
rs_193922573 |
7 SubmittersRCV000030397RCV000413563RCV000681592RCV003473151RCV003991464RCV005042099RCV006638718 |
|
NM_000536.4(RAG2):c.217C>T (p.Arg73Cys)
|
SNV Germline |
Chr11:36593952 |
Likely pathogenic |
Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Severe combined immunodeficiency disease Histiocytic medullary reticulosis Recombinase activating gene 2 deficiency Combined immunodeficiency with skin granulomas Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Histiocytic medullary reticulosis |
Reviewed By Expert Panel |
CA214218 |
rs_193922574 |
7 SubmittersRCV001059752RCV001731320RCV001831615RCV003325303RCV003473152RCV005049396 |
|
NM_000536.4(RAG2):c.418C>T (p.His140Tyr)
|
SNV Germline |
Chr11:36593751 |
Likely pathogenic |
Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Histiocytic medullary reticulosis |
Criteria Provided Single Submitter |
|
rs_147155709 |
2 SubmittersRCV005225063RCV005610823 |
|
NM_000536.4(RAG2):c.547T>C (p.Phe183Leu)
|
SNV Germline |
Chr11:36593622 |
Likely pathogenic |
Condition: not provided |
Criteria Provided Single Submitter |
CA235830 |
rs_786205468 |
1 SubmittersRCV000171193 |
|
NM_000536.4(RAG2):c.140A>T (p.His47Leu)
|
SNV Germline |
Chr11:36594029 |
Conflicting classifications of pathogenicity |
Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Histiocytic medullary reticulosis Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas |
Criteria Provided Conflicting Classifications |
CA5950619 |
rs_776913146 |
2 SubmittersRCV000299706RCV000356700RCV002520718 |
|
NM_000536.4(RAG2):c.1517G>A (p.Arg506His)
|
SNV Germline |
Chr11:36592652 |
Conflicting classifications of pathogenicity |
Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Histiocytic medullary reticulosis Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas |
Criteria Provided Conflicting Classifications |
CA5950401 |
rs_144812762 |
2 SubmittersRCV000268156RCV000320901RCV001247256 |
|
NM_000536.4(RAG2):c.63G>A (p.Leu21=)
|
SNV Germline |
Chr11:36594106 |
Conflicting classifications of pathogenicity |
Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Histiocytic medullary reticulosis Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas |
Criteria Provided Conflicting Classifications |
CA5950627 |
rs_142797325 |
3 SubmittersRCV000259547RCV000317157RCV000898892 |
|
NM_000536.4(RAG2):c.518A>G (p.Asn173Ser)
|
SNV Germline |
Chr11:36593651 |
Conflicting classifications of pathogenicity |
Condition: not provided Histiocytic medullary reticulosis Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas not specified |
Criteria Provided Conflicting Classifications |
CA5950561 |
rs_766735610 |
3 SubmittersRCV000412743RCV005044628RCV004689729 |
|
NM_000536.4(RAG2):c.539C>A (p.Pro180His)
|
SNV Germline |
Chr11:36593630 |
Pathogenic/Likely pathogenic |
Condition: not provided Atypical severe combined immunodeficiency due to complete RAG1/2 deficiency Recombinase activating gene 2 deficiency Inborn error of immunity |
Criteria Provided Multiple Submitters No Conflicts |
CA16619320 |
rs_1064793251 |
2 SubmittersRCV000481067RCV000681583 |
|
NM_000536.4(RAG2):c.479C>T (p.Ser160Leu)
|
SNV Germline |
Chr11:36593690 |
Conflicting classifications of pathogenicity |
Condition: not provided Histiocytic medullary reticulosis Recombinase activating gene 2 deficiency Inborn error of immunity |
Criteria Provided Conflicting Classifications |
CA5950568 |
rs_756694972 |
2 SubmittersRCV000479386RCV000681582 |
|
NM_000536.4(RAG2):c.464T>C (p.Leu155Pro)
|
SNV Germline |
Chr11:36593705 |
Pathogenic/Likely pathogenic |
Condition: not provided Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas Combined immunodeficiency with skin granulomas Severe combined immunodeficiency disease Histiocytic medullary reticulosis |
Criteria Provided Multiple Submitters No Conflicts |
CA16619321 |
rs_1064793250 |
5 SubmittersRCV000478082RCV001865427RCV003476152RCV005431692RCV006640655 |
|
NM_000536.4(RAG2):c.193G>T (p.Asp65Tyr)
|
SNV Germline |
Chr11:36593976 |
Likely pathogenic |
Condition: not provided Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Recombinase activating gene 2 deficiency Inborn error of immunity Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Histiocytic medullary reticulosis Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas Severe combined immunodeficiency disease Recombinase activating gene 2 deficiency |
Reviewed By Expert Panel |
CA380144219 |
rs_909264507 |
6 SubmittersRCV000489480RCV000681576RCV002496885RCV002526041RCV003226307RCV003403136 |
|
NM_000536.4(RAG2):c.1391G>A (p.Arg464His)
|
SNV Germline |
Chr11:36592778 |
Conflicting classifications of pathogenicity |
Condition: not provided Histiocytic medullary reticulosis Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive |
Criteria Provided Conflicting Classifications |
CA5950422 |
rs_147748696 |
4 SubmittersRCV000497469RCV001104243RCV001104244RCV001086733 |
|
NM_000536.4(RAG2):c.1504A>G (p.Met502Val)
|
SNV Germline |
Chr11:36592665 |
Conflicting classifications of pathogenicity |
Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Histiocytic medullary reticulosis Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Recombinase activating gene 2 deficiency Inborn error of immunity Histiocytic medullary reticulosis Histiocytic medullary reticulosis Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas Condition: not provided not specified RAG2-related disorder |
Criteria Provided Conflicting Classifications |
CA5950404 |
rs_145614809 |
11 SubmittersRCV000669183RCV000645688RCV000681604RCV001103958RCV001103959RCV001579122RCV001653875RCV002282190RCV003925510 |
|
NM_000536.4(RAG2):c.595G>T (p.Glu199Ter)
|
SNV Germline |
Chr11:36593574 |
Pathogenic/Likely pathogenic |
Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas Histiocytic medullary reticulosis |
Criteria Provided Multiple Submitters No Conflicts |
CA5950551 |
rs_748727021 |
2 SubmittersRCV000547792RCV001834778 |
|
NM_000536.4(RAG2):c.1321C>A (p.Pro441Thr)
|
SNV Germline |
Chr11:36592848 |
Likely pathogenic |
Condition: not provided |
Criteria Provided Single Submitter |
CA380140623 |
rs_1336343565 |
1 SubmittersRCV005251152 |
|
NM_000536.4(RAG2):c.1442A>C (p.His481Pro)
|
SNV Germline |
Chr11:36592727 |
Conflicting classifications of pathogenicity |
Inborn error of immunity Recombinase activating gene 2 deficiency Histiocytic medullary reticulosis |
Criteria Provided Conflicting Classifications |
CA380140350 |
rs_1564995465 |
2 SubmittersRCV000681603RCV006640772 |
|
NM_000536.4(RAG2):c.1375A>C (p.Met459Leu)
|
SNV Germline |
Chr11:36592794 |
Likely pathogenic |
Histiocytic medullary reticulosis Inborn error of immunity Combined immunodeficiency with skin granulomas Atypical severe combined immunodeficiency due to complete RAG1/2 deficiency Recombinase activating gene 2 deficiency Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Histiocytic medullary reticulosis |
Criteria Provided Multiple Submitters No Conflicts |
CA380140499 |
rs_1204766339 |
3 SubmittersRCV000681600RCV001378887RCV001834862 |
|
NM_000536.4(RAG2):c.1366G>A (p.Ala456Thr)
|
SNV Germline |
Chr11:36592803 |
Likely pathogenic |
Histiocytic medullary reticulosis Inborn error of immunity Recombinase activating gene 2 deficiency |
Criteria Provided Single Submitter |
CA380140519 |
rs_1564995611 |
1 SubmittersRCV000681599 |
|
NM_000536.4(RAG2):c.1357T>A (p.Trp453Arg)
|
SNV Germline |
Chr11:36592812 |
Likely pathogenic |
Histiocytic medullary reticulosis Inborn error of immunity Recombinase activating gene 2 deficiency Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Histiocytic medullary reticulosis Recombinase activating gene 2 deficiency Histiocytic medullary reticulosis Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive |
Reviewed By Expert Panel |
CA380140542 |
rs_1564995627 |
5 SubmittersRCV000681598RCV001389163RCV001834861RCV003403379RCV005044876 |
|
NM_000536.4(RAG2):c.1338C>G (p.Cys446Trp)
|
SNV Germline |
Chr11:36592831 |
Likely pathogenic |
Inborn error of immunity Recombinase activating gene 2 deficiency Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Recombinase activating gene 2 deficiency |
Reviewed By Expert Panel |
CA380140584 |
rs_1564995660 |
4 SubmittersRCV000681596RCV002283492RCV003492115 |
|
NM_000536.4(RAG2):c.1332C>G (p.Ile444Met)
|
SNV Germline |
Chr11:36592837 |
Likely pathogenic |
Histiocytic medullary reticulosis Inborn error of immunity Recombinase activating gene 2 deficiency Histiocytic medullary reticulosis Recombinase activating gene 2 deficiency Severe combined immunodeficiency, B cell-negative |
Reviewed By Expert Panel |
CA380140600 |
rs_1564995662 |
4 SubmittersRCV000681595RCV001331311RCV003991476RCV004527390 |
|
NM_000536.4(RAG2):c.1329G>T (p.Met443Ile)
|
SNV Germline |
Chr11:36592840 |
Likely pathogenic |
Histiocytic medullary reticulosis Inborn error of immunity Recombinase activating gene 2 deficiency |
Criteria Provided Single Submitter |
CA380140608 |
rs_773710101 |
1 SubmittersRCV000681594 |
|
NM_000536.4(RAG2):c.1320A>C (p.Lys440Asn)
|
SNV Germline |
Chr11:36592849 |
Likely pathogenic |
Histiocytic medullary reticulosis Inborn error of immunity Recombinase activating gene 2 deficiency |
Criteria Provided Single Submitter |
CA5950436 |
rs_754413772 |
1 SubmittersRCV000681593 |
|
NM_000536.4(RAG2):c.685C>T (p.Arg229Trp)
|
SNV Germline |
Chr11:36593484 |
Pathogenic |
Histiocytic medullary reticulosis Inborn error of immunity Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Recombinase activating gene 2 deficiency Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Histiocytic medullary reticulosis Combined immunodeficiency with skin granulomas Recombinase activating gene 2 deficiency Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Condition: not provided |
Reviewed By Expert Panel |
CA5950542 |
rs_765298019 |
7 SubmittersRCV000681587RCV001042148RCV001273255RCV003471948RCV003991475RCV005420216RCV005632510 |
|
NM_000536.4(RAG2):c.583T>G (p.Tyr195Asp)
|
SNV Germline |
Chr11:36593586 |
Likely pathogenic |
Recombinase activating gene 2 deficiency Inborn error of immunity |
Criteria Provided Single Submitter |
CA380142545 |
rs_1479328926 |
1 SubmittersRCV000681584 |
|
NM_000536.4(RAG2):c.470G>T (p.Gly157Val)
|
SNV Germline |
Chr11:36593699 |
Likely pathogenic |
Histiocytic medullary reticulosis Inborn error of immunity Recombinase activating gene 2 deficiency |
Criteria Provided Single Submitter |
CA380142919 |
rs_1564997121 |
1 SubmittersRCV000681581 |
|
NM_000536.4(RAG2):c.283G>C (p.Gly95Arg)
|
SNV Germline |
Chr11:36593886 |
Conflicting classifications of pathogenicity |
Histiocytic medullary reticulosis Inborn error of immunity Recombinase activating gene 2 deficiency Histiocytic medullary reticulosis |
Criteria Provided Conflicting Classifications |
CA380143806 |
rs_36001797 |
2 SubmittersRCV000681579RCV005606679 |
|
NM_000536.4(RAG2):c.218G>A (p.Arg73His)
|
SNV Germline |
Chr11:36593951 |
Pathogenic/Likely pathogenic |
Histiocytic medullary reticulosis Histiocytic medullary reticulosis Atypical severe combined immunodeficiency due to complete RAG1/2 deficiency Recombinase activating gene 2 deficiency Inborn error of immunity Immunodeficiency 104 Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Histiocytic medullary reticulosis |
Criteria Provided Multiple Submitters No Conflicts |
CA5950607 |
rs_762407838 |
7 SubmittersRCV000626255RCV000681577RCV001815003RCV002530946RCV003471947RCV005044875 |
|
NM_000536.4(RAG2):c.186C>A (p.Phe62Leu)
|
SNV Germline |
Chr11:36593983 |
Likely pathogenic |
Combined immunodeficiency with skin granulomas Recombinase activating gene 2 deficiency Inborn error of immunity |
Criteria Provided Single Submitter |
CA380144251 |
rs_1564997563 |
1 SubmittersRCV000681575 |
|
NM_000536.4(RAG2):c.104G>T (p.Gly35Val)
|
SNV Germline |
Chr11:36594065 |
Pathogenic/Likely pathogenic |
Histiocytic medullary reticulosis Inborn error of immunity Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Recombinase activating gene 2 deficiency Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Histiocytic medullary reticulosis RAG2-related disorder Combined immunodeficiency with skin granulomas Severe combined immunodeficiency disease Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive |
Criteria Provided Multiple Submitters No Conflicts |
CA380144622 |
rs_148508754 |
7 SubmittersRCV000681572RCV001219165RCV001834860RCV003420026RCV003471946RCV005056255RCV005860112 |
|
NM_000536.4(RAG2):c.955G>T (p.Gly319Ter)
|
SNV Germline |
Chr11:36593214 |
Likely pathogenic |
Condition: not provided Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Recombinase activating gene 2 deficiency Combined immunodeficiency with skin granulomas Histiocytic medullary reticulosis |
Reviewed By Expert Panel |
CA220579698 |
rs_879541124 |
5 SubmittersRCV000595625RCV001220628RCV003403398RCV003465344RCV006640788 |
|
NM_000536.4(RAG2):c.1268G>A (p.Cys423Tyr)
|
SNV Germline |
Chr11:36592901 |
Pathogenic |
Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas Histiocytic medullary reticulosis |
Criteria Provided Single Submitter |
CA5950444 |
rs_768567592 |
2 SubmittersRCV000645685RCV001835894 |
|
NM_000536.4(RAG2):c.1396C>T (p.Leu466Phe)
|
SNV Germline |
Chr11:36592773 |
Likely pathogenic |
Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Histiocytic medullary reticulosis Condition: not provided Recombinase activating gene 2 deficiency Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Histiocytic medullary reticulosis Severe combined immunodeficiency disease |
Reviewed By Expert Panel |
CA380140455 |
rs_1590713653 |
7 SubmittersRCV000806149RCV001104241RCV001104242RCV003480843RCV003492174RCV005049699RCV005902013 |
|
NM_000536.4(RAG2):c.367C>T (p.Arg123Cys)
|
SNV Germline |
Chr11:36593802 |
Conflicting classifications of pathogenicity |
Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas Histiocytic medullary reticulosis Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas Histiocytic medullary reticulosis Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas |
Criteria Provided Conflicting Classifications |
CA5950585 |
rs_147319483 |
5 SubmittersRCV000874937RCV001104353RCV001104352RCV001331313RCV003224483 |
|
NM_000536.4(RAG2):c.477C>T (p.Arg159=)
|
SNV Germline |
Chr11:36593692 |
Conflicting classifications of pathogenicity |
Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas Histiocytic medullary reticulosis Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive not specified RAG2-related disorder |
Criteria Provided Conflicting Classifications |
CA5950569 |
rs_141659100 |
5 SubmittersRCV000954539RCV001104350RCV001104351RCV001175480RCV003943067 |
|
NM_000536.4(RAG2):c.629T>C (p.Ile210Thr)
|
SNV Germline |
Chr11:36593540 |
Pathogenic |
Common variable immunodeficiency |
Criteria Provided Single Submitter |
CA380142446 |
rs_1590715754 |
1 SubmittersRCV001027617 |
|
NM_000536.4(RAG2):c.419A>G (p.His140Arg)
|
SNV Germline |
Chr11:36593750 |
Likely pathogenic |
Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas Histiocytic medullary reticulosis Severe combined immunodeficiency disease |
Criteria Provided Multiple Submitters No Conflicts |
CA380143161 |
rs_1335036396 |
3 SubmittersRCV001046638RCV001832439RCV005912480 |
|
NM_000536.4(RAG2):c.1209T>C (p.Asn403=)
|
SNV Germline |
Chr11:36592960 |
Conflicting classifications of pathogenicity |
Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Histiocytic medullary reticulosis Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive |
Criteria Provided Conflicting Classifications |
CA474032805 |
rs_1351286949 |
2 SubmittersRCV001104246RCV001104245RCV001419564 |
|
NM_000536.4(RAG2):c.1074G>A (p.Glu358=)
|
SNV Germline |
Chr11:36593095 |
Conflicting classifications of pathogenicity |
Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Histiocytic medullary reticulosis Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive |
Criteria Provided Conflicting Classifications |
CA5950480 |
rs_557047531 |
3 SubmittersRCV001107674RCV001107673RCV001519036 |
|
NM_000536.4(RAG2):c.174G>A (p.Lys58=)
|
SNV Germline |
Chr11:36593995 |
Conflicting classifications of pathogenicity |
Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Histiocytic medullary reticulosis Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive |
Criteria Provided Conflicting Classifications |
CA5950612 |
rs_202020106 |
2 SubmittersRCV001104355RCV001104354RCV001458719 |
|
NM_000536.4(RAG2):c.1290G>A (p.Trp430Ter)
|
SNV Germline |
Chr11:36592879 |
Likely pathogenic |
Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas Histiocytic medullary reticulosis Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas Combined immunodeficiency with skin granulomas |
Criteria Provided Multiple Submitters No Conflicts |
CA380140688 |
rs_1434362838 |
3 SubmittersRCV001220928RCV002491690RCV003473774 |
|
NM_000536.4(RAG2):c.1492A>T (p.Lys498Ter)
|
SNV Germline |
Chr11:36592677 |
Conflicting classifications of pathogenicity |
Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Histiocytic medullary reticulosis RAG2-related disorder Combined immunodeficiency with skin granulomas Histiocytic medullary reticulosis Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive |
Criteria Provided Conflicting Classifications |
CA5950406 |
rs_373151027 |
5 SubmittersRCV001228693RCV001833977RCV003918788RCV005040056 |
|
NM_000536.4(RAG2):c.1367C>A (p.Ala456Asp)
|
SNV Germline |
Chr11:36592802 |
Conflicting classifications of pathogenicity |
Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Histiocytic medullary reticulosis Histiocytic medullary reticulosis Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive |
Criteria Provided Conflicting Classifications |
CA380140517 |
rs_1479440369 |
3 SubmittersRCV001300504RCV001835435RCV005040143 |
|
NM_000536.4(RAG2):c.1025G>A (p.Gly342Glu)
|
SNV Germline |
Chr11:36593144 |
Conflicting classifications of pathogenicity |
Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas Histiocytic medullary reticulosis Inborn genetic diseases |
Criteria Provided Conflicting Classifications |
CA5950488 |
rs_367615315 |
3 SubmittersRCV001297485RCV001835408RCV006372461 |
|
NM_000536.4(RAG2):c.826G>A (p.Gly276Ser)
|
SNV Germline |
Chr11:36593343 |
Pathogenic |
Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas |
Criteria Provided Single Submitter |
CA380142032 |
rs_1851074701 |
1 SubmittersRCV001313623 |
|
NM_000536.4(RAG2):c.686G>C (p.Arg229Pro)
|
SNV Germline |
Chr11:36593483 |
Pathogenic/Likely pathogenic |
Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive |
Criteria Provided Multiple Submitters No Conflicts |
CA380142321 |
rs_121917894 |
2 SubmittersRCV001331314RCV003227962 |
|
NM_000536.4(RAG2):c.110C>T (p.Pro37Leu)
|
SNV Germline |
Chr11:36594059 |
Conflicting classifications of pathogenicity |
Histiocytic medullary reticulosis Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive |
Criteria Provided Conflicting Classifications |
CA380144592 |
rs_1851104914 |
2 SubmittersRCV001331310RCV003227961 |
|
NM_000536.4(RAG2):c.1328T>C (p.Met443Thr)
|
SNV Germline |
Chr11:36592841 |
Likely pathogenic |
Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive |
Criteria Provided Single Submitter |
CA380140611 |
rs_1406618487 |
1 SubmittersRCV001379226 |
|
NM_000536.4(RAG2):c.442C>T (p.Arg148Ter)
|
SNV Germline |
Chr11:36593727 |
Pathogenic |
Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Histiocytic medullary reticulosis Condition: not provided Combined immunodeficiency with skin granulomas |
Criteria Provided Multiple Submitters No Conflicts |
CA380143053 |
rs_1315729938 |
4 SubmittersRCV001386499RCV001826170RCV003394023RCV003473967 |
|
NM_000536.4(RAG2):c.1365T>C (p.His455=)
|
SNV Germline |
Chr11:36592804 |
Conflicting classifications of pathogenicity |
Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Condition: not provided |
Criteria Provided Conflicting Classifications |
CA220579027 |
rs_369276846 |
2 SubmittersRCV001478678RCV004801024 |
|
NM_000536.4(RAG2):c.1295C>T (p.Pro432Leu)
|
SNV Germline |
Chr11:36592874 |
Conflicting classifications of pathogenicity |
not specified Combined immunodeficiency with skin granulomas |
Criteria Provided Conflicting Classifications |
CA380140676 |
rs_753677011 |
2 SubmittersRCV001779459RCV003475084 |
|
NM_000536.4(RAG2):c.475C>T (p.Arg159Cys)
|
SNV Germline |
Chr11:36593694 |
Pathogenic/Likely pathogenic |
Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas Histiocytic medullary reticulosis Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Condition: not provided Combined immunodeficiency with skin granulomas Histiocytic medullary reticulosis Severe combined immunodeficiency disease |
Criteria Provided Multiple Submitters No Conflicts |
CA5950570 |
rs_764485070 |
7 SubmittersRCV001824243RCV001869833RCV002503333RCV004720949RCV003475102RCV006638976RCV005432805 |
|
NM_000536.4(RAG2):c.130G>T (p.Gly44Ter)
|
SNV Germline |
Chr11:36594039 |
Pathogenic |
Condition: not provided Recombinase activating gene 2 deficiency Combined immunodeficiency with skin granulomas Histiocytic medullary reticulosis Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas |
Reviewed By Expert Panel |
CA380144505 |
rs_1440633758 |
5 SubmittersRCV004774534RCV003401875RCV003471043RCV006639099RCV001943182 |
|
NM_000536.4(RAG2):c.686G>T (p.Arg229Leu)
|
SNV Germline |
Chr11:36593483 |
Likely pathogenic |
Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas Histiocytic medullary reticulosis |
Criteria Provided Multiple Submitters No Conflicts |
CA5950541 |
rs_121917894 |
2 SubmittersRCV001998712RCV006639342 |
|
NM_000536.4(RAG2):c.913C>G (p.Pro305Ala)
|
SNV Germline |
Chr11:36593256 |
Likely pathogenic |
Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Histiocytic medullary reticulosis |
Criteria Provided Multiple Submitters No Conflicts |
CA5950503 |
rs_370666759 |
2 SubmittersRCV002002843RCV006639325 |
|
NM_000536.4(RAG2):c.469G>A (p.Gly157Arg)
|
SNV Germline |
Chr11:36593700 |
Likely pathogenic |
Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas |
Criteria Provided Single Submitter |
CA380142925 |
rs_756676209 |
1 SubmittersRCV002022809 |
|
NM_000536.4(RAG2):c.476G>A (p.Arg159His)
|
SNV Germline |
Chr11:36593693 |
Likely pathogenic |
Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive |
Criteria Provided Single Submitter |
CA380142898 |
rs_2133314621 |
1 SubmittersRCV002040484 |
|
NM_000536.4(RAG2):c.470G>C (p.Gly157Ala)
|
SNV Germline |
Chr11:36593699 |
Likely pathogenic |
Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas |
Criteria Provided Single Submitter |
CA380142921 |
rs_1564997121 |
1 SubmittersRCV002030270 |
|
NM_000536.4(RAG2):c.608G>A (p.Gly203Glu)
|
SNV Germline |
Chr11:36593561 |
Likely pathogenic |
Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas |
Criteria Provided Single Submitter |
CA380142489 |
rs_1851081720 |
1 SubmittersRCV002043766 |
|
NM_000536.4(RAG2):c.914C>T (p.Pro305Leu)
|
SNV Germline |
Chr11:36593255 |
Likely pathogenic |
Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas |
Criteria Provided Single Submitter |
CA5950502 |
rs_756192655 |
1 SubmittersRCV003061066 |
|
NM_000536.4(RAG2):c.95G>A (p.Gly32Glu)
|
SNV Germline |
Chr11:36594074 |
Pathogenic/Likely pathogenic |
Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas Severe combined immunodeficiency disease |
Criteria Provided Multiple Submitters No Conflicts |
CA380144682 |
rs_1224542443 |
2 SubmittersRCV003058303RCV006262341 |
|
NM_000536.4(RAG2):c.486G>A (p.Met162Ile)
|
SNV Germline |
Chr11:36593683 |
Conflicting classifications of pathogenicity |
Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Inborn genetic diseases |
Criteria Provided Conflicting Classifications |
CA5950566 |
rs_767924789 |
2 SubmittersRCV003072560RCV005473324 |
|
NM_000536.4(RAG2):c.122G>A (p.Cys41Tyr)
|
SNV Germline |
Chr11:36594047 |
Likely pathogenic |
Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas |
Criteria Provided Single Submitter |
CA380144546 |
rs_2494799758 |
1 SubmittersRCV002577362 |
|
NM_000536.4(RAG2):c.1375A>G (p.Met459Val)
|
SNV Germline |
Chr11:36592794 |
Conflicting classifications of pathogenicity |
Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive not specified |
Criteria Provided Conflicting Classifications |
CA380140498 |
rs_1204766339 |
2 SubmittersRCV002667969RCV004700805 |
|
NM_000536.4(RAG2):c.3G>A (p.Met1Ile)
|
SNV Germline |
Chr11:36594166 |
Likely pathogenic |
Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas Recombinase activating gene 2 deficiency |
Reviewed By Expert Panel |
CA380145362 |
rs_2494801025 |
2 SubmittersRCV002847102RCV003991484 |
|
NM_000536.4(RAG2):c.653T>A (p.Ile218Asn)
|
SNV Germline |
Chr11:36593516 |
Likely pathogenic |
Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas Histiocytic medullary reticulosis Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas |
Criteria Provided Multiple Submitters No Conflicts |
CA380142392 |
rs_2494794434 |
2 SubmittersRCV002851216RCV005045007 |
|
NM_000536.4(RAG2):c.1024G>T (p.Gly342Ter)
|
SNV Germline |
Chr11:36593145 |
Pathogenic |
Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas |
Criteria Provided Single Submitter |
CA380141304 |
rs_2494791063 |
1 SubmittersRCV002894152 |
|
NM_000536.4(RAG2):c.284G>A (p.Gly95Glu)
|
SNV Germline |
Chr11:36593885 |
Conflicting classifications of pathogenicity |
Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive not specified Histiocytic medullary reticulosis |
Criteria Provided Conflicting Classifications |
CA380143798 |
rs_2494798051 |
3 SubmittersRCV002958786RCV006262579RCV005608814 |
|
NM_000536.4(RAG2):c.303T>A (p.Asn101Lys)
|
SNV Germline |
Chr11:36593866 |
Likely pathogenic |
Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas Severe combined immunodeficiency disease |
Criteria Provided Multiple Submitters No Conflicts |
CA380143718 |
rs_2133315445 |
2 SubmittersRCV003017779RCV006454313 |
|
NM_000536.4(RAG2):c.217C>G (p.Arg73Gly)
|
SNV Germline |
Chr11:36593952 |
Likely pathogenic |
Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Histiocytic medullary reticulosis |
Criteria Provided Multiple Submitters No Conflicts |
CA380144113 |
rs_193922574 |
2 SubmittersRCV003031080RCV006641119 |
|
NM_000536.4(RAG2):c.951G>A (p.Trp317Ter)
|
SNV Germline |
Chr11:36593218 |
Pathogenic/Likely pathogenic |
Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas |
Criteria Provided Multiple Submitters No Conflicts |
CA380141631 |
rs_2494791806 |
2 SubmittersRCV003472566RCV003779085 |
|
NM_000536.4(RAG2):c.1038T>A (p.Tyr346Ter)
|
SNV Unknown |
Chr11:36593131 |
Likely pathogenic |
Combined immunodeficiency with skin granulomas |
Criteria Provided Single Submitter |
CA380141271 |
rs_1174918583 |
1 SubmittersRCV003463447 |
|
NM_000536.4(RAG2):c.479C>A (p.Ser160Ter)
|
SNV Germline |
Chr11:36593690 |
Pathogenic/Likely pathogenic |
Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas Histiocytic medullary reticulosis |
Criteria Provided Multiple Submitters No Conflicts |
CA380142890 |
rs_756694972 |
3 SubmittersRCV003471783RCV003779087RCV005047613 |
|
NM_000536.4(RAG2):c.1043T>A (p.Leu348Ter)
|
SNV Germline |
Chr11:36593126 |
Likely pathogenic |
Condition: not provided Histiocytic medullary reticulosis |
Criteria Provided Multiple Submitters No Conflicts |
CA380141259 |
rs_2494790882 |
2 SubmittersRCV003489411RCV006643036 |
|
NM_000536.4(RAG2):c.103G>A (p.Gly35Ser)
|
SNV Germline |
Chr11:36594066 |
Likely pathogenic |
Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas |
Criteria Provided Single Submitter |
CA380144633 |
rs_2494799990 |
1 SubmittersRCV003785398 |
|
NM_000536.4(RAG2):c.1210G>T (p.Glu404Ter)
|
SNV Germline |
Chr11:36592959 |
Pathogenic |
Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive |
Criteria Provided Single Submitter |
CA380140871 |
rs_2494789497 |
1 SubmittersRCV003790464 |
|
NM_000536.4(RAG2):c.1257C>G (p.Cys419Trp)
|
SNV Germline |
Chr11:36592912 |
Pathogenic |
Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive |
Criteria Provided Single Submitter |
CA380140760 |
rs_1434109608 |
1 SubmittersRCV003786917 |
|
NM_000536.4(RAG2):c.1441C>G (p.His481Asp)
|
SNV Germline |
Chr11:36592728 |
Pathogenic |
Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive |
Criteria Provided Single Submitter |
CA5950415 |
rs_762054841 |
1 SubmittersRCV003793654 |
|
NM_000536.4(RAG2):c.1442A>G (p.His481Arg)
|
SNV Germline |
Chr11:36592727 |
Pathogenic |
Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas |
Criteria Provided Single Submitter |
CA380140349 |
rs_1564995465 |
1 SubmittersRCV003796928 |
|
NM_000536.4(RAG2):c.951G>T (p.Trp317Cys)
|
SNV Germline |
Chr11:36593218 |
Pathogenic |
Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas |
Criteria Provided Single Submitter |
CA380141628 |
rs_2494791806 |
1 SubmittersRCV003809722 |
|
NM_000536.4(RAG2):c.1329G>C (p.Met443Ile)
|
SNV Germline |
Chr11:36592840 |
Pathogenic |
Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas |
Criteria Provided Single Submitter |
CA380140607 |
rs_773710101 |
1 SubmittersRCV003815428 |
|
NM_000536.4(RAG2):c.831T>A (p.Tyr277Ter)
|
SNV Unknown |
Chr11:36593338 |
Likely pathogenic |
Combined immunodeficiency with skin granulomas |
Criteria Provided Single Submitter |
|
rs_2494793071 |
1 SubmittersRCV004574684 |
|
NM_000536.4(RAG2):c.41T>A (p.Leu14Ter)
|
SNV Unknown |
Chr11:36594128 |
Likely pathogenic |
Combined immunodeficiency with skin granulomas |
Criteria Provided Single Submitter |
|
rs_2494800701 |
1 SubmittersRCV004574689 |
|
NM_000536.4(RAG2):c.1409C>G (p.Ser470Ter)
|
SNV Germline |
Chr11:36592760 |
Likely pathogenic |
Condition: not provided |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV004599030 |
|
NM_000536.4(RAG2):c.1442A>T (p.His481Leu)
|
SNV Germline |
Chr11:36592727 |
Conflicting classifications of pathogenicity |
not specified Histiocytic medullary reticulosis Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive |
Criteria Provided Conflicting Classifications |
|
|
2 SubmittersRCV004689536RCV005040752 |
|
NM_000536.4(RAG2):c.749C>G (p.Thr250Arg)
|
SNV Germline |
Chr11:36593420 |
Likely pathogenic |
Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV004720203 |
|
NM_000536.4(RAG2):c.10C>T (p.Gln4Ter)
|
SNV Germline |
Chr11:36594159 |
Likely pathogenic |
Salla disease Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV004813323RCV005860447 |
|
NM_000536.4(RAG2):c.1369C>T (p.Gln457Ter)
|
SNV Germline |
Chr11:36592800 |
Likely pathogenic |
Histiocytic medullary reticulosis Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV005046752 |
|
NM_000536.4(RAG2):c.1340C>G (p.Ser447Cys)
|
SNV Germline |
Chr11:36592829 |
Likely pathogenic |
Histiocytic medullary reticulosis Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV005046753 |
|
NM_000536.4(RAG2):c.1019C>A (p.Ser340Ter)
|
SNV Germline |
Chr11:36593150 |
Likely pathogenic |
Histiocytic medullary reticulosis Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas |
Criteria Provided Single Submitter |
|
|
1 SubmittersRCV005046755 |
|
NM_000536.4(RAG2):c.921G>A (p.Trp307Ter)
|
SNV Germline |
Chr11:36593248 |
Pathogenic |
Histiocytic medullary reticulosis Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas |
Criteria Provided Multiple Submitters No Conflicts |
|
|
2 SubmittersRCV005046757RCV006564324 |
|
NM_000536.4(RAG2):c.793C>T (p.Gln265Ter)
|
SNV Germline |
Chr11:36593376 |
Likely pathogenic |
Histiocytic medullary reticulosis Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas |
Criteria Provided Single Submitter |
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1 SubmittersRCV005046759 |
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NM_000536.4(RAG2):c.516G>A (p.Trp172Ter)
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SNV Germline |
Chr11:36593653 |
Likely pathogenic |
Histiocytic medullary reticulosis Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas Histiocytic medullary reticulosis |
Criteria Provided Multiple Submitters No Conflicts |
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2 SubmittersRCV005050116RCV006637294 |
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NM_000536.4(RAG2):c.1357T>C (p.Trp453Arg)
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SNV Germline |
Chr11:36592812 |
Pathogenic |
Severe combined immunodeficiency disease |
Criteria Provided Single Submitter |
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1 SubmittersRCV005088298 |
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NM_000536.4(RAG2):c.913C>T (p.Pro305Ser)
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SNV Germline |
Chr11:36593256 |
Likely pathogenic |
Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive |
Criteria Provided Single Submitter |
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1 SubmittersRCV005228996 |
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NM_000536.4(RAG2):c.950G>T (p.Trp317Leu)
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SNV Germline |
Chr11:36593219 |
Likely pathogenic |
Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive |
Criteria Provided Single Submitter |
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1 SubmittersRCV005226522 |
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NM_000536.4(RAG2):c.607G>A (p.Gly203Arg)
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SNV Germline |
Chr11:36593562 |
Likely pathogenic |
Combined immunodeficiency with skin granulomas Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive |
Criteria Provided Single Submitter |
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1 SubmittersRCV005222013 |
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NM_000536.4(RAG2):c.284G>T (p.Gly95Val)
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SNV Germline |
Chr11:36593885 |
Likely pathogenic |
Histiocytic medullary reticulosis |
Criteria Provided Single Submitter |
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1 SubmittersRCV005607819 |
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NM_000536.4(RAG2):c.184T>G (p.Phe62Val)
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SNV Germline |
Chr11:36593985 |
Likely pathogenic |
Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive |
Criteria Provided Single Submitter |
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1 SubmittersRCV005859741 |
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NM_000536.4(RAG2):c.1357T>G (p.Trp453Gly)
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SNV Germline |
Chr11:36592812 |
Likely pathogenic |
Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas |
Criteria Provided Single Submitter |
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1 SubmittersRCV006599659 |
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NM_000536.4(RAG2):c.1330A>T (p.Ile444Phe)
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SNV Germline |
Chr11:36592839 |
Likely pathogenic |
Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive Combined immunodeficiency with skin granulomas |
Criteria Provided Single Submitter |
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1 SubmittersRCV006600814 |
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NM_000536.4(RAG2):c.1324G>A (p.Ala442Thr)
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SNV Germline |
Chr11:36592845 |
Likely pathogenic |
Recombinase activating gene 2 deficiency |
Criteria Provided Single Submitter |
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1 SubmittersRCV006636528 |
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NM_000536.4(RAG2):c.1260C>A (p.Cys420Ter)
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SNV Germline |
Chr11:36592909 |
Likely pathogenic |
Histiocytic medullary reticulosis |
Criteria Provided Single Submitter |
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1 SubmittersRCV006637532 |
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NM_000536.4(RAG2):c.1335C>A (p.Tyr445Ter)
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SNV Germline |
Chr11:36592834 |
Likely pathogenic |
Histiocytic medullary reticulosis |
Criteria Provided Single Submitter |
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1 SubmittersRCV006637533 |
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NM_000536.4(RAG2):c.1438G>T (p.Glu480Ter)
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SNV Germline |
Chr11:36592731 |
Pathogenic |
Histiocytic medullary reticulosis |
Criteria Provided Single Submitter |
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1 SubmittersRCV006637534 |
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NM_000536.4(RAG2):c.41T>G (p.Leu14Ter)
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SNV Germline |
Chr11:36594128 |
Likely pathogenic |
Histiocytic medullary reticulosis |
Criteria Provided Single Submitter |
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1 SubmittersRCV006637535 |
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NM_000536.4(RAG2):c.508G>T (p.Glu170Ter)
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SNV Germline |
Chr11:36593661 |
Likely pathogenic |
Histiocytic medullary reticulosis |
Criteria Provided Single Submitter |
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1 SubmittersRCV006637537 |
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NM_000536.4(RAG2):c.509A>G (p.Glu170Gly)
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SNV Germline |
Chr11:36593660 |
Likely pathogenic |
Histiocytic medullary reticulosis |
Criteria Provided Single Submitter |
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1 SubmittersRCV006637538 |