GenTIGSA Gene Database on Rare Genetic Disorders

Lipoxygenase homology PLAT domains 1 (LOXHD1) Associated conditions:  1. Stickler syndrome 
mRNA Information: Transcript Variants and Protein Isoforms
SNo. Status mRNA accession Protein accession Genomic DNA accession (Chromosome) mRNA location on genomic DNA Assembly UniProtkb ID
1 REVIEWED NM_001145472.3 NP_001138944.1 NC_000018.10 (46476960..46657219, complement) Reference GRCh38.p14 Primary Assembly Q8IVV2
2 REVIEWED NM_001145473.3 NP_001138945.1 NC_000018.10 (46476960..46657219, complement) Reference GRCh38.p14 Primary Assembly Q8IVV2
3 REVIEWED NM_001173129.2 NP_001166600.1 NC_000018.10 (46476960..46657219, complement) Reference GRCh38.p14 Primary Assembly Q8IVV2
4 REVIEWED NM_001308013.2 NP_001294942.1 NC_000018.10 (46476960..46657219, complement) Reference GRCh38.p14 Primary Assembly Q8IVV2
5 REVIEWED NM_001384474.1 NP_001371403.1 NC_000018.10 (46476960..46657219, complement) Reference GRCh38.p14 Primary Assembly Q8IVV2
6 REVIEWED NM_144612.7 NP_653213.6 NC_000018.10 (46476960..46657219, complement) Reference GRCh38.p14 Primary Assembly Q8IVV2

Transcript variants arise from alternative splicing during gene expression, producing multiple mRNA transcripts from a single gene, each encoding distinct protein isoforms.

PubMed Links for Transcript Variants (Isoforms)
Link 127 reference articles

Variant Information Lipoxygenase homology PLAT domains 1 (LOXHD1) Mutation Visualization Dashboard: Pathogenic variant distribution chart

 

IndiGenomes variants: Exploring and mapping pathogenic variants in gene Lipoxygenase homology PLAT domains 1 (LOXHD1)
ClinVar variants:Revealing mutagenic patterns

GO Term of Lipoxygenase homology PLAT domains 1 (LOXHD1)
SNo. Reported in speceis Evidence Qualifier GO term Category Pubmed Link
1Homo sapiensIBAinvolved_insensory perception of soundProcess- 
2Homo sapiensIEAinvolved_insensory perception of soundProcess- 
3Homo sapiensIMPinvolved_insensory perception of soundProcess19732867 
4Homo sapiensIBAis_active_instereociliumComponent- 
5Homo sapiensIEAlocated_instereociliumComponent- 
6Homo sapiensISSlocated_instereociliumComponent-